OIST PhD Graduates

Theses are published in the OIST Institutional Repository and are available online.

 

Graduated in AY2019 (Total as of September 2019: 5)

Eligible for award at the AY2019 Graduation Ceremony on May 23, 2020

 

Mr. Simon Peter Mekhail

Supervisor: Professor Síle Nic Chormaic

Research Unit: Light-Matter Interactions for Quantum Technologies Unit 

Thesis: Optical Fiber Probes for in-Vivo Neuronal Compressive Microendscopy and Mode Analysis in Nanofibers

Graduation Date: 2019 September 30

 

Mr. Neil Dalphin

Supervisor: Professor Bernd Kuhn

Research Unit: Optical Neuroimaging Unit

Thesis: Two-Photon Voltage Imaging of Supragranular Barrel Cortex in Mice: Oscillations and Responses

Graduation Date: 2019 September 30

 

Mr. Sho Kasumie

Supervisor: Professor Síle Nic Chormaic

Research Unit: Light-Matter Interactions for Quantum Technologies Unit 

Thesis: Hollow Whispering Gallery Mode Resonators: from Fabrication to Application

Graduation Date: 2019 September 30

 

Mr. Thomas Nieddu

Supervisor: Professor Síle Nic Chormaic

Research Unit: Light-Matter Interactions for Quantum Technologies Unit 

Thesis: Optical Nanofibers for Multiphoton Processes and Selective Mode Interactions with Rubidium

Graduation Date: 2019 July 31

 

Mr. Jiabao Chen

Supervisor: Professor Denis Konstantinov

Co-Supervisor: Professor Thomas Busch

Research Unit: Quantum Dynamics Unit

Thesis: Coherent control of charged particle systems strongly interacting with microwave photons

Graduation Date: 2019 August 31

 

Graduated in AY2018 (Total as of April 2019: 19)

Awarded at AY2018 Graduation Ceremony on May 25, 2019

2018 Graduation Ceremony webpage 

YouTube Video of Graduation Ceremony

 

Ms. Lashmi Piriya Ananda Babu

Supervisor: Professor Tomoyuki Takahashi

Co-Supervisor: Professor Jeff Wickens

Research Unit: Cellular & Molecular Synaptic Function Unit

Thesis:  Functional roles of microtubules in a giant presynaptic terminal

Graduation Date: 2018 May 17

 

Mr. Dongrong Zhang

Supervisor: Professor Gustavo Gioia

Research Unit: Continuum Physics Unit

Thesis: Spectral theory of turbulent flows 

Graduation Date: 2018 June 30

 

Mr.  Chris Reinke

Supervisor: Professor Kenji Doya

Research Unit: Neural Computation Unit

Thesis: The Gamma-Ensemble - Adaptive Reinforcement Learning via Modular Discounting

Graduation Date: 2018 June 30

 

Ms.  E Laine Wong

Supervisor: Professor Keshav Dani

Research Unit: Femtosecond Spectroscopy Unit

Thesis: Ultrafast spatiotemporal control of photocarriers in doped semiconductors

Graduation Date: 2018 July 31

 

Mr.  Kalale Chola 

Supervisor: Professor Tsumoru Shintake

Research Unit: Quantum Wave Microscopy Unit

Thesis: Development of an SPH variant of implicit LES for studying wave energy transport

Graduation Date: 2018 August 31

 

Mr.  Tsai-Ming Lu

Supervisor: Professor Noriyuki Satoh

Research Unit: Marine Genomics Unit

Thesis: Comparative genomic studies on Dicyema japonicum: the phylogenetic position of dicyemids and the genomic adaptations to parasitic lifestyle

Graduation Date: 2018 August 31

 

Ms.  Jui-Yin Lin

Supervisor: Professor Denis Konstantinov

Research Unit: Quantum Dynamics Unit

Thesis Title: Transport properties of strongly correlated 2D electrons confined in microchannels

Graduation Date: 2018 September 30

 

Ms.  Patricia Himeka Wepfer

Supervisor: Professor Satoshi Mitarai

Co-Supervisor: Professor Evan Economo

Research Unit: Marine Biophysics Unit

Thesis: Spatial genetic structure in the coral genus Galaxea (Euphyllidae) and their associated Symbiodiniaceae communities

Graduation Date: 2018 November 30

 

Mr.  Ray Xin Lee

Supervisor: Professor Bernd Kuhn

Co-Supervisor: Professor Greg Stephens

Research Unit: Optical Neuroimaging Unit

Thesis: Nature and source of animal spontaneous behaviors: Insights from psychobehavioral development and neuronal population dynamics in mice

Graduation Date: 2018 November 30

 

Ms.  Jessica Verena Schulze

Supervisor: Professor Kenji Doya

Research Unit: Neural Computation Unit

Thesis: Spatial and modular regularization in effective connectivity inference from neural activity data

Graduation Date: 2018 December 31

 

Mr.  Hiroaki Hamada

Supervisor: Professor Kenji Doya

Co-Supervisor: Professor Greg Stephens

Research Unit:  Neural Computation Unit

Thesis:  Serotonergic control of brain-wide dynamics

Graduation Date: 2019 January 31

 

Mr.  Masakazu Igarashi

Supervisor: Professor Jeffery Wickens

Research Unit: Neurobiology Research Unit 

Thesis:  The role of interhemispheric cortico-cortical connections in bimanual coordination in the rat

Graduation Date: 2019 February 28

 

Mr.  Kazuto Kawamura

Supervisor: Professor Ichiro Maruyama

Research Unit: Information Processing Biology Unit

Thesis:  Forward genetic screen for Caenorhabditis elegans mutants with a progressive decline in adult locomotor function

Graduation Date: 2019 March 31

 

Mr.  Tosif Ahamed

Supervisor: Professor Ichiro Maruyama

Co-Supervisor: Professor Greg Stephens

Research Unit: Information Processing Biology Unit

Thesis:  Capturing the nonlinear dynamics of animal behavior with applications to the nematode C. elegans

Graduation Date: 2019 March 31

 

Ms.  Nilupaer Abudukeyoumu

Supervisor: Professor Gordon Arbuthnott

Research Unit: Brain Mechanism for Behaviour Unit

Thesis:  Cholinergic interneurons in striatal microcircuit dynamics studied with anatomical and behavioral methods

Graduation Date: 2019 March 31

 

Mr.  Haytham Mohamed

Supervisor: Professor Tadashi Yamamoto

Research Unit: Cell Signal Unit

Thesis:  Post-transcriptional regulation of circadian rhythm: Involvement of the CCR4-NOT complex

Graduation Date: 2019 March 31

 

Ms.  Irina Reshodko

Supervisor: Professor Thomas Busch

Research Unit: Quantum Systems Unit

Thesis:  State engineering in one-dimensional quantum gases

Graduation Date: 2019 March 31

 

Mr.  Yafei Mao

Supervisor: Professor Noriyuki Satoh

Co-Supervisor: Professor Evan Economo

Research Unit: Marine Genomics Unit

Thesis: Whole-genome sequence analysis of the evolutionary history of the reef-building coral genus Acropora (Scleractinia, Cnidaria)

Graduation Date: 2019 April 30

 

Mr.  Girish Beedessee

Supervisor: Professor Noriyuki Satoh

Research Unit: Marine Genomics Unit

Thesis: Genomic insights on secondary metabolism in symbiotic dinoflagellates

Graduation Date: 2019 April 30

 

Graduated in AY2017 (Total as of February 2018: 14)

Awarded at AY2017 Graduation Ceremony, February 24 2018

2017 Graduation Ceremony page

YouTube Video of Graduation Ceremony

 

Mr.  Mark Daly

Supervisor: Professor Síle Nic Chormaic

Research Unit: Light-Matter Interactions Unit

Thesis: Light-induced interactions using optical near-field devices

Graduation Date: 2017 March 10

 

Mr.  Lee O'Riordan

Supervisor: Professor Thomas Busch

Research Unit: Quantum Systems Unit

Thesis: Non-equilibrium vortex dynamics in rapidly rotating Bose-Einstein condensates

Graduation Date: 2017 March 10

 

Mr.  Faisal Mahmood

Supervisor: Professor Ulf Skoglund

Co-Supervisor: Professor Hiroaki Kitano

Research Unit: Structural Cellular Biology Unit

Thesis: Algorithmic and architectural developments for cryo-electron tomography

Graduation Date: 2017 March 10

 

Mr.  Mart Toots

Supervisor: Professor Ulf Skoglund

Research Unit: Structural Cellular Biology Unit

Thesis: Exploring the potential of cryo-electron tomography on protein nanocrystals for molecular structure determination

Graduation Date: 2017 July 18

 

Mr.  Dongxin Zhang

Supervisor: Professor Fujie Tanaka

Research Unit: Chemistry and Chemical Bioengineering Unit

Thesis: Amine catalyzed functionalization of enolizable ketones

Graduation Date: 2017 August 14

 

Mr.  Yi-Jyun Luo

Supervisor: Professor Noriyuki Satoh

Research Unit: Marine Genomics Unit

Thesis: Insights into lophotrochozoan evolution and the origin of morphological novelties from brachiopod, phoronid, and nemertean genomes

Graduation Date: 2017 August 14

 

Mr.  Kenneth Baughman

Supervisor: Professor Noriyuki Satoh

Research Unit: Marine Genomics Unit

Thesis:  Decoding and analysis of the Crown-of-Thorns Starfish Acanthaster planci genome

Graduation Date: 2017 August 25