Documentation

How-To

Getting Started

• Get Access
• Connect to the Clusters
• Access Storage and transfer data
• Introduction to Bash
  • ⚡Advanced Bash⚡

Use The Clusters

• Use the module system
• Use Slurm to run your programs
  • ⚡Advanced Slurm⚡
• Install software and create modules
   
• The EnginFrame Software Portal
• DCV Remote Windows Workstation
   
• Running parallel jobs
• Runing a hybrid MPI and openMP job
   
• Profile Your Job
• The "ruse" profile tool

Software Resources

• Running Comsol jobs
• Running Matlab jobs
  • GPU with Matlab
• Running Mathematica jobs
• Software on Sango
  • Software usage notes
     
• The OIST Bioinformatics User Group
   
• Local version control systems (Obsolete)
• Desktop HPC Software (Obsolete)

Reference

Hardware Resources

• Hardware Overview
• Research Storage
  • Long term storage
    and archiving
  • Comspace
  • HPacquire
     
• Deigo
  • Large Memory Partitions
  • Deigo Migration Guide
     
• Saion (GPU and KNL cluster)
  • Open Partitions
  • Restricted Partitions

Policies

• Rules and Guidelines
  • Scientific Attribution
  • Resource limits
     
• Exchange cores and running time
• Request Storage
   
• OIST Github account
• Access the Japanese national HPCI Resources

Basic Training

• Introduction to HPC and Scientific Computing
• Introduction to the Command Line

Programming

• Python programming on the Cluster
• C and C++ for Scientific Computing

Advanced Subjects

• GPU Programming with CUDA

Visualization

• Introduction to Blender. Tutorial 1. [PDF]
• Computer Graphics & resources [OneDrive]

The HPC User Group

• The HPC User Group Page

• Our Occasional Newsletter

For help and advice:

email ask-scda@oist.jp

or come to our daily

Open Hours

15:30 -17:30 in B648