Publications

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Here is a partial list of OIST publications that made use of SCDA resources in some form; typically research storage, archiving, simulation or data analysis.

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Date range: 2017-2022

Last update: 2022-01-12

2022

M. Cavaiola, S. Olivieri, J. Guerrero, A. Mazzino, and M. E. Rosti. 2022. "Role of barriers in the airborne spread of virus-containing droplets: A study based on high-resolution direct numerical simulations." Physics of Fluids, 34, 015104. doi: 10.1063/5.0072840

F. Metz, and M. Bukov. 2022. "Self-Correcting Quantum Many-Body Control using Reinforcement Learning with Tensor Networks." arXiv: 2201.11790

Andrea Mazzino and Marco Edoardo Rosti. 2022. "Puff turbulence in the limit of strong buoyancy." Philosophical Transaction of the Royal Society A 380, 20210093, 2022 doi: 10.1098/rsta.2021.0093

Julian Katzke, Pavel Puchenkov, Heiko Stark, and Evan P Economo. 2022. "A Roadmap to Reconstructing Muscle Architecture from CT Data" Integrative Organismal Biology 4:1 2022. doi: 10.1093/iob/obac001

M. Cavaiola, S. Olivieri, A. Mazzino, M. E. Rosti. 2022. "Transport and evaporation of virus-containing droplets exhaled by men and women in typical cough events." Meccanica 57 567-575 doi: 10.1007/s11012-021-01469-2

Thu D.H. Truong, Hanh H. Nguyen, Hieu B. Le, Do Hung Dung, H.-M. Tran, Nguyen Duy Vy, Tran Duong Anh-Tai and Vinh N.T. Pham. 2022. "Soft parameters in Coulomb potential of noble atoms for nonsequential double ionization: Classical ensemble model and simulations." Computer Physics Communications 276, 2022, 108372. doi: 10.1016/j.cpc.2022.108372

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2021

M. E. Rosti, M. Cavaiola, S. Olivieri, A. Seminara, and A. Mazzino. 2021. "Turbulence role in the fate of virus-containing droplets in violent expiratory events." Phys. Rev. Research 3, 013091, 2021. doi: 10.1103/PhysRevResearch.3.013091

C. Hickey, M. Gohlke, C. Berke, and S. Trebst. 2021. "Generic field-driven phenomena in Kitaev spin liquids: Canted magnetism and proximate spin liquid physics." Phys. Rev. B 103, 064417. doi: 10.1103/PhysRevB.103.064417

Simon Morelli, Ayaka Usui, Elizabeth Agudelo, and Nicolai Friis. 2021. "Bayesian parameter estimation using Gaussian states and measurements." Quantum Sci. Technol. 6 025018. doi: 10.1088/2058-9565/abd83d

Tadashi Kozuno, Yunhao Tang, Mark Rowland, Rémi Munos, Steven Kapturowski, Will Dabney, Michal Valko, and David Abel. 2021. "Revisiting Peng's Q(λ) for Modern Reinforcement Learning." Arxiv:2103.00107

A. Bliznina, A. Masunaga, M.J. Mansfield, Y. Tan, A.W. Liu, C. West, T. Rustagi, H.C. Chien, S. Kumar, J. Pichon, C. Plessy and N.M. Luscombe. 2021. "Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing." BMC Genomics, 22.1, 1-18. doi: 10.1186/s12864-021-07512-6

Stefano Pascarelli, Dalmira Merzhakupova, Gen-Ichiro Uechi and Paola Laurino. 2021. "Binding of single-mutant epidermal growth factor (EGF) ligands alter the stability of the EGF receptor dimer and promote growth signaling." Journal of Biological Chemistry, 2021, 100872. doi: 10.1016/j.jbc.2021.100872

Mason B., Cooke I., Moya A., Augustin R., Lin M.-F., Satoh N., Bosch T.C.G. Bourne D.G., Hayward D.C., Adrade N., Forêt S., Ying H., Ball E.E., Miller D.J. 2021. "AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones." Developmental and Comparative Immunology 114: 103866. doi: 10.1016/j.dci.2020.103866

Suzuki, Y. and Economo, E.P. 2021. "From species sorting to mass effects: spatial network structure mediates the shift between metacommunity archetypes." Ecography, 44: 715-726. doi: 10.1111/ecog.05453

Li, Lin and Chakraborty, Pinaki. 2021. "Birth of a cold core in tropical cyclones past landfall." Phys. Rev. Fluids,6:L051801. doi: 10.1103/PhysRevFluids.6.L051801

Friederike Metz, Juan Polo, Natalya Weber and Thomas Busch. 2021. "Deep learning based quantum vortex detection in atomic Bose-Einstein condensates." Machine Learning: Science and Technology doi: 10.1088/2632-2153/abea6a

Korbinian Kottmann, Friederike Metz, Joana Fraxanet and Niccolo Baldelli. 2021. "Variational Quantum Anomaly Detection: Unsupervised mapping of phase diagrams on a physical quantum computer." ArXiv: 2106.07912

L. Ruks and Th. Busch. 2021. "Long-range interactions of quantum emitters coupled through structured baths." arXiv: 2105.14238

Reséndiz-Benhumea Georgina Montserrat, Sangati Ekaterina, Sangati Federico, Keshmiri Soheil, Froese Tom. 2021. "Shrunken Social Brains? A Minimal Model of the Role of Social Interaction in Neural Complexity." Frontiers in Neurorobotics 15:72. doi: 10.3389/fnbot.2021.634085

Tokuro Shimokawa. 2021. "Signatures of finite-temperature mirror symmetry breaking in the S=1/2 Shastry-Sutherland model"Phys. Rev. B 103, 134419 doi: 10.1103/PhysRevB.103.134419

Stefano Olivieri, Andrea Mazzino, and Marco E. Rosti. 2021. "Universal flapping states of elastic fibers in modulated turbulence." Physics of Fluids 33, 071704 doi: 10.1063/5.0058835

N. Wirkuttis and J. Tani. 2021. "Leading or Following? Dyadic Robot Imitative Interaction Using the Active Inference Framework." IEEE Robotics and Automation Letters 6:3 pp. 6024-6031. doi: 10.1109/LRA.2021.3090015

Thomás Fogarty, Miguel Ángel García-March, Lea F. Santos, and Nathan L. Harshman. 2021. "Probing the edge between integrability and quantum chaos in interacting few-atom systems." Quantum 5:486. doi: 10.22331/q-2021-06-29-486

Stefano Olivieri, Francesco Viola, Andrea Mazzino, and Marco E. Rosti. 2021. "Direct numerical simulation of flapping flags in grid-induced turbulence." Physics of Fluids 33, 085116 doi: 10.1063/5.0060181

Ekaterina Sangati, Soheil Keshmiri, and Federico Sangati. 2021. "Evolution of Neural Complexity in Division of Labor Tasks." ALIFE 2021: The 2021 Conference on Artificial Life pp. 88 doi: 10.1162/isal_a_00422

Ianto Cannon, Daulet Izbassarov, Outi Tammisola, Luca Brandt, and Marco E. Rosti. 2021. "The effect of droplet coalescence on drag in turbulent channel flows." Physics of Fluids 33, 085112 doi: 10.1063/5.0058632

M. E. Rosti and S. Takagi. 2021. "Shear-thinning and shear-thickening emulsions in shear flows." Physics of Fluids 33, 083319 doi: 10.1063/5.0063180

A. Mazzino and M. E. Rosti. 2021. "Unraveling the secrets of turbulence in a fluid puff." Physical Review Letters, APS, 127, 094501 doi: 10.1103/PhysRevLett.127.094501

Keisuke Fukunaga and Yohei Yokobayashi. 2021. "Directed evolution of orthogonal RNA–RBP pairs through library-vs-library in vitro selection." Nucleic Acids Research, gkab527 doi: 10.1093/nar/gkab527

T. Haga and T. Fukai. 2021. "Multiscale representations of community structures in attractor neural networks." PLOS Computational Biology 17(8): e1009296 doi: 10.1371/journal.pcbi.1009296

V. Rathee, A. Monti, M. E. Rosti and A. Q. Shen. 2021. "Shear thickening behavior in dense repulsive and attractive suspensions of hard spheres." Soft Matter, The Royal Society of Chemistry, 17, 8047-8058 doi: 10.1039/D1SM00971K

S. Brizzolara, M. E. Rosti, S. Olivieri, L. Brandt, M. Holzner, A. Mazzino. 2021. "Fiber Tracking Velocimetry for two-point statistics of turbulence." Physical Review X, 11, 031060 doi: 10.1103/PhysRevX.11.031060

A. Monti, V. Rathee, A. Q. Shen and M. E. Rosti. 2021. "A fast and efficient tool to study the rheology of dense suspensions." Physics of Fluids, 33, 103314. doi: 10.1063/5.0065655

Korbinian Kottmann, Friederike Metz, Joana Fraxanet, and Niccolò Baldelli. 2021. "Variational quantum anomaly detection: Unsupervised mapping of phase diagrams on a physical quantum computer." Phys. Rev. Research 3, 043184. doi: 10.1103/PhysRevResearch.3.043184

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2020

Eric Danielson, Vyankat A. Sontakke, Alexander J. Porkovich, Zhenwei Wang, Pawan Kumar, Zakaria Ziadi, Yohei Yokobayashi, Mukhles Sowwan. 2020. "Graphene based field-effect transistor biosensors functionalized using gas-phase synthesized gold nanoparticles". Sensors and Actuators B: Chemicalvol 320, 128432. doi: 10.1016/j.snb.2020.128432

Ayaka Usui, Thomás Fogarty, Steve Campbell, Simon A Gardiner and Thomas Busch. 2020. "Spin–orbit coupling in the presence of strong atomic correlations". New J. Phys.22 013050. doi: 10.1088/1367-2630/ab6576

Aikaterini Gratsea and Friederike Metz and Thomas Busch. 2020. "Universal and optimal coin sequences for high entanglement generation in 1D discrete time quantum walks". arXiv:2003.07141 [quant-ph].

Marco E. Rosti and Luca Brandt. 2020. "Low Reynolds number turbulent flows over elastic walls". Physics of Fluids 32, 083109. doi: 10.1063/5.0018770

Marco E. Rosti, Parisa Mirbod and Luca Brandt. 2020. "The impact of porous walls on the rheology of suspensions". Chemical Engineering Science, Volume 230, 2021, 116178. doi: 10.1016/j.ces.2020.116178

Eric Danielson, Mirco Dindo, Alexander J. Porkovich, Pawan Kumar, Zhenwei Wang, Prashant Jain, Trimbak Mete, Zakaria Ziadi, Raghavendra Kikkeri, Paola Laurino, and Mukhles Sowwan. 2020. "Non-enzymatic and highly sensitive lactose detection utilizing graphene field-effect transistors". Biosensors and Bioelectronics 165 (2020): 112419. doi: 10.1016/j.bios.2020.112419

Matthias Gohlke, Li Ern Chern, Hae-Young Kee, and Yong Baek Kim. 2020. "Emergence of nematic paramagnet via quantum order-by-disorder and pseudo-Goldstone modes in Kitaev magnets". Phys. Rev. Research 2, 043023. doi: 10.1103/PhysRevResearch.2.043023

Li, L., and Chakraborty, P. 2020. "Slower decay of landfalling hurricanes in a warming world". Nature 587, 230–234 (2020). doi: 10.1038/s41586-020-2867-7

GeoumYoung Kang, Daniel W. Carlson, Tae Ho Kang, Seungki Lee, Simon J. Haward, Inhee Choi, Amy Q. Shen, and Aram J. Chung. 2020. "Intracellular Nanomaterial Delivery via Spiral Hydroporation". ACS Nano 2020 14 (3), 3048-3058 doi: 10.1021/acsnano.9b07930

Wichert, I., Jee, S., De Schutter, E., and Hong, S. 2020. "Pycabnn: Efficient and extensible åsoftware to construct an anatomical basis for a physiologically realistic neural network model". Frontiers in Neuroinformatics, 14:31. doi: 10.3389/fninf.2020.00031

Han, D., De Schutter, E., and Hong, S. 2020. "Lamina-specific neuronal properties promote robust, stable signal propagation in feedforward networks". In Advances in Neural Information Processing Systems, volume 33, in press.

Zang, Y., Hong, S., and De Schutter, E. 2020. "Firing rate-dependent phase responses of purkinje cells support transient oscillations". Elife, 9:e60692. doi: 10.7554/eLife.60692.

Lindeman, S., Kros, L., Hong, S., Mejias, J. F., Romano, V., Negrello, M., Bosman, L. W., and De Zeeuw, C. I. 2020. "Cerebellar purkinje cells can differentially modulate coherence between sensory and motor cortex depending on region and behavior". bioRxiv. doi: 10.1101/2020.03.11.986943

Samuel RP-J Ross, Nicholas R. Friedman, Masashi Yoshimura, Takuma Yoshida, Ian Donohue and Evan P. Economo. 2020. "Utility of acoustic indices for ecological monitoring in complex sonic environments". Ecological Indicators. doi: 10.1016/j.ecolind.2020.107114

Beedessee, G., Kubota, T., Arimoto, A. et al. 2020. "Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate". BMC Biol 18, 139. doi: 10.1186/s12915-020-00873-6

Dongqi Han, Kenji Doya and Jun Tani. 2020. "Self-organization of action hierarchy and compositionality by reinforcement learning with recurrent neural networks". Neural Networks, Volume 129, Pages 149-162. doi: 10.1016/j.neunet.2020.06.002

Wang K, Tomura R, Chen W, Kiyooka M, Ishizaki H, Aizu T, Minakuchi Y, Seki M, Suzuki Y, Omotezako T, Suyama R, Masunaga A, Plessy C, Luscombe NM, Dantec C, Lemaire P, Itoh T, Toyoda A, Nishida H and Onuma TA. 2020. "A genome database for a Japanese population of the larvacean Oikopleura dioica". Dev Growth Differ. Aug;62(6):450-461. doi: 10.1111/dgd.12689. Epub 2020 Aug 14. PMID: 32677034.

R. T. Cerbus, J. Sakakibara, G. Gioia, and P. Chakraborty. 2020. "The turbulent flow in a slug: a re-examination." Journal of Fluid Mechanics, vol. 883, article A13. doi: 10.1017/jfm.2019.863

R. T. Cerbus, C-C. Liu, G. Gioia, and P. Chakraborty. 2020. "Small-scale universality in the spectral structure of transitional pipe flows." Science Advances, Vol. 6, no. 4, eaaw6256. doi: 10.1126/sciadv.aaw6256

Luigi Filippo Chiara, Marco Edoardo Rosti, Francesco Picano and Luca Brandt. 2020. "Suspensions of deformable particles in Poiseuille flows at finite inertia." Fluid Dynamics Research, VOl. 52, no. 6. doi: 10.1088/1873-7005/abc606

Mahir Bilen Can, Yiyang She, and Liron Speyer. 2020. "Strong Gelfand subgroups of F≀Sn." International Journal of Mathematics doi: 10.1142/S0129167X21500105

Rosti, M.E., Olivieri, S., Cavaiola, M. et al. 2020. "Fluid dynamics of COVID-19 airborne infection suggests urgent data for a scientific design of social distancing." Sci Rep 10, 22426 (2020). doi: 10.1038/s41598-020-80078-7

Xiushang Xu, Amogh Kinikar, Marco Di Giovannantonio, Pascal Ruffieux, Klaus Müllen, Roman Fasel and Akimitsu Narita. 2020. "On-Surface Synthesis of Dibenzohexacenohexacene and Dibenzopentaphenoheptaphene." Bulletin of the Chemical Society of Japan. DOI: 10.1246/bcsj.20200382

Carlos Enrique Gutierrez, Henrik Skibbe, Ken Nakae, Hiromichi Tsukada, Jean Lienard, Akiya Watakabe, Junichi Hata, Marco Reisert, Alexander Woodward, Yoko Yamaguchi, Tetsuo Yamamori, Hideyuki Okano, Shin Ishii and Kenji Doya. 2020. "Optimization and validation of diffusion MRI-based fiber tracking with neural tracer data as a reference." Scientific Reports 10: 21285. DOI: 10.1038/s41598-020-78284-4

Paula Villa Martín, Aleš Buček, Thomas Bourguignon, Simone Pigolotti. 2020. "Ocean currents promote rare species diversity in protists." Science Advances Vol. 6, no. 29 doi: 10.1126/sciadv.aaz9037

Aleš Buček, Mario Vazdar, Michal Tupec, Aleš Svatoš, Iva Pichová. 2020. "Desaturase specificity is controlled by the physicochemical properties of a single amino acid residue in the substrate binding tunnel" Computational and Structural Biotechnology Journal V 18, Pp 1202-1209 doi: 10.1016/j.csbj.2020.05.011

Le Lay C, Shi M, Buček A, Bourguignon T, Lo N, Holmes EC. 2020. "Unmapped RNA Virus Diversity in Termites and Their Symbionts." Viruses 12(10):1145 doi: 10.3390/v12101145

2019

Eric Danielson, Venugopal Dhamodharan, Alexander J. Porkovich, Pawan Kumar, Nan Jian, Zakaria Ziadi, Panagiotis Grammatikopoulos, Yohei Yokobayashi, and Mukhles Sowwan. 2019. "Gas-Phase Synthesis for Label-Free Biosensors: Zinc-Oxide Nanowires Functionalized with Gold Nanoparticles". Scientific Reports 9, no 1 (2019):1-10. doi: 10.1038/s41598-019-53960-2

Pichon J, Luscombe NM and Plessy C. 2019. "Widespread use of the "ascidian" mitochondrial genetic code in tunicates". F1000Res. Dec 10;8:2072. doi: 10.12688/f1000research.21551.2 PMID: 32148763; PMCID: PMC7047913.

Tokuro Shimokawa, Tsuyoshi Okubo, and Hikaru Kawamura. 2019. "Multiple-q states of the J1−J2 classical honeycomb-lattice Heisenberg antiferromagnet under a magnetic field"Phys. Rev. B 100, 224404 doi: 10.1103/PhysRevB.100.224404

Tokuro Shimokawa and Hikaru Kawamura. 2019. "Ripple State in the Frustrated Honeycomb-Lattice Antiferromagnet"Phys. Rev. Lett. 123, 057202 doi: 10.1103/PhysRevLett.123.057202

Michal Tupec, Aleš Buček, Václav Janoušek, Heiko Vogel, Darina Prchalová, Jiří Kindl, Tereza Pavlíčková, Petra Wenzelová, Ullrich Jahn, Irena Valterová, Iva Pichová. 2019. "Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera." Elife Feb 4;8:e39231. doi: 10.7554/eLife.39231

Ales Bucek, Jan Šobotník, Shulin He, Mang Shi, Dino P. McMahon, Edward C. Holmes, Yves Roisin, Nathan Lo, Thomas Bourguignon. 2019. "Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies." Current Biology Vol. 29:21, Pp 3728-3734.e4 doi: 10.1016/j.cub.2019.08.076.

Wang M, Buček A, Šobotník J, Sillam-Dussès D, Evans TA, Roisin Y, Lo N, Bourguignon T. 2019. "Historical biogeography of the termite clade Rhinotermitinae (Blattodea: Isoptera)." Mol Phylogenet Evol. Mar;132:100-104. doi: 10.1016/j.ympev.2018.11.005

2018

Owen Benton, L. D. C. Jaubert, Rajiv Singh, Jaan Oitmaa, and Nic Shannon. 2018. "Quantum spin ice with frustrated transverse exchange: from pi-flux phase to nematic quantum spin liquid". Phys. Rev. Lett. 121, 067201. doi: 10.1103/PhysRevLett.121.067201

Cerbus, Rory T, Chien-Chia Liu, Gustavo Gioia, and Pinaki Chakraborty. 2018. "Laws of Resistance in Transitional Pipe Flows." Physical Review Letters 120, 054502. doi:10.1103/PhysRevLett.120.054502

Inoue J. and Satoh, N.. 2018. "ORTHOSCOPE: An Automatic Web Tool for Phylogenetically Inferring Bilaterian Orthogroups with User-Selected Taxa." Molecular Biology and Evolution, Volume 36, Issue 3, 1 March 2019, Pages 621–631. doi:10.1093/molbev/msy226.

Jayawardena, Nadishka, Laura N. Burga, Richard A. Easingwood, Yoshimasa Takizawa, Matthias Wolf, and Mihnea Bostina. 2018. “Structural Basis for Anthrax Toxin Receptor 1 Recognition by Seneca Valley Virus.” Proceedings of the National Academy of Sciences 115 (46). National Academy of Sciences: E10934–E10940. doi:10.1073/pnas.1810664115.

Vilmos Kocsis, Karlo Penc, Toomas Rõõm, Urmas Nagel, Jakub Vít, Judit Romhányi, Yusuke Tokunaga, Yasujiro Taguchi, Yoshinori Tokura, István Kézsmárki, and Sándor Bordács. 2018. "Identification of Antiferromagnetic Domains Via the Optical Magnetoelectric Effect." Phys. Rev. Lett. 121, 057601. doi:10.1103/PhysRevLett.121.057601

Machida, S., Y. Takizawa, M. Ishimaru, Y. Sugita, S. Sekine, J. -ichi Nakayama, M. Wolf, and H. Kurumizaka. 2018. “Structural Basis of Heterochromatin Formation by Human Hp1.” Molecular Cell 69 (3): 385–397.e8. doi:10.1016/j.molcel.2017.12.011.

Romain Sibille, Nicolas Gauthier, Han Yan, Monica Ciomaga Hatnean, Jacques Ollivier, Barry Winn, Geetha Balakrishnan, Michel Kenzelmann, Nic Shannon, and Tom Fennell. 2018. "Experimental signatures of emergent quantum electrodynamics in a quantum spin ice." Nature Physics 14, 711-715. doi: 10.1038/s41567-018-0116-x

Sugita, Y., H. Matsunami, Y. Kawaoka, T. Noda, and M. Wolf. 2018. “Cryo-EM structure of the Ebola virus nucleoprotein-RNA complex at 3.6 Å resolution.” Nature 563 (7729): 137–40.

Takizawa, Y., H. Tanaka, S. Machida, M. Koyama, K. Maehara, Y. Ohkawa, P. A. Wade, M. Wolf, and H. Kurumizaka. 2018. “Cryo-Em Structure of the Nucleosome Containing the Alb1 Enhancer Dna Sequence.” Open Biology 8 (3). Royal Society Journals. doi:10.1098/rsob.170255.

Han Yan, Rico Pohle and Nic Shannon. 2018. "Half moons are pinch points with dispersion." Phys. Rev. B 98, 140402(R). doi:10.1103/PhysRevB.98.140402

T. Sabuwala, C. Butcher, G. Gioia, and P. Chakraborty. 2018. "Ray systems in granular cratering." Physical Review Letters, vol. 120, article 264501. doi: 10.1103/PhysRevLett.120.264501

2017

Aird, S. D., J. Arora, A. Barua, L. Qiu, K. Terada, and A. S. Mikheyev. 2017. “Population Genomic Analysis of a Pitviper Reveals Microevolutionary Forces Underlying Venom Chemistry.” Genome Biology and Evolution, 1–10. doi:10.1093/gbe/evx199.

Aird, S. D., N. J. da Silva Jr., L. Qiu, A. Villar-Briones, V. A. Saddi, M. Pires de Campos Telles, M. L. Grau, and A. S. Mikheyev. 2017. “Coralsnake Venomics: Analyses of Venom Gland Transcriptomes and Proteomes of Six Brazilian Taxa.” Toxins (Basel) 9: 1–64. doi:10.3390/toxins9060187.

Chen, W., and E. De Schutter. 2017. “Parallel Steps: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers.” Frontiers in Neuroinformatics 11: 13. doi:10.3389/fninf.2017.00013.

Filonenko, G. F. 2017. “Intramolecular Non-Covalent Interactions as a Strategy Towards Controlled Photoluminescence in Copper(i) Complexes.” Journal of Materials Chemistry C 5 (7): 1638–45. doi:10.1039/C6TC04989C.

Hall, M. R., K. M. Kocot, K. W. Baughman, S. L. Fernandez-Valverde, M. E. A. Gauthier, W. L. Hatleberg, A. Krishnan, et al. 2017. “The Crown-of-Thorns Starfish Genome as a Guide for Biocontrol of This Coral Reef Pest.” Nature 544 (7649): 231–34. doi:10.1038/nature22033.

Inoue, J. Y. 2017. “The Chordate Ancestor Possessed a Single Copy of the Brachyury Gene for Notochord Acquisition.” Zoological Letters 3 (4): 1–7. doi:10.1186/s40851-017-0064-9.

Kamidaira, Y., Y. Uchiyama, and S. Mitarai. 2017. “Eddy-Induced Transport of the Kuroshio Warm Water Around the Ryukyu Islands in the East China Sea.” Continental Shelf Research 143 (Supplement C): 206–18. doi:10.1016/j.csr.2016.07.004.

Kobori, S., K. Takahashi, and Y. Yokobayashi. 2017. “Deep Sequencing Analysis of Aptazyme Variants Based on a Pistol Ribozyme.” ACS Synth Biol. doi:10.1021/acssynbio.7b00057.

Lu, T-M, M. Kanda, N. Satoh, and H. Furuya. 2017. “The Phylogenetic Position of Dicyemid Mesozoans Offers Insights into Spiralian Evolution.” Zoological Letters 3 (6). doi:10.1186/s40851-017-0068-5.

Maigné, Alan, and Matthias Wolf. 2017. “Low-Dose Electron Energy-Loss Spectroscopy Using Electron Counting Direct Detectors.” Microscopy (Oxford, England) 67 (November): 1–12. doi:10.1093/jmicro/dfx088.

Morandin, C., A. S. Mikheyev, J. S. Pedersen, and H. Helantera. 2017. “Evolutionary Constraints Shape Caste-Specific Gene Expression Across 15 Ant Species.” Evolution 71 (5): 1273–84. doi:10.1111/evo.13220.

Remeika, M. R. 2017. “Transferrable Optimization of Spray-Coated Pbi2 Films for Perovskite Solar Cell Fabrication.” Journal of Materials Chemistry A 5 (12): 5709–18. doi:10.1039/C6TA09922J.

Roberts, R. E., C. A. Motti, K. W. Baughman, N. Satoh, M. R. Hall, and S. F. Cummins. 2017. “Identification of Putative Olfactory G-Protein Coupled Receptors in Crown-of-Thorns Starfish, Acanthaster Planci.” BMC Genomics 18 (400). doi:10.1186/s12864-017-3793-4.

Sinclair, R. M. R. 2017. “Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification.” Journal of Virology, 1–13. doi:10.1128/JVI.02275-16.

Sudhakar, S. K., S. Hong, I. Raikov, R. Publio, C. Lang, T. Close, D. Guo, M. Negrello, and E. De Schutter. 2017. “Spatiotemporal Network Coding of Physiological Mossy Fiber Inputs by the Cerebellar Granular Layer.” PLoS Computational Biology 13 (9): 1–35. doi:10.1371/journal.pcbi.1005754.

Tian, Qingyuan, Lars-Göran Öfverstedt, and Ulf Skoglund Structural Cellular Biology Unit. 2017. “Semi-Automatically Aligned Tilt Images in Electron Tomography.” In, 71–75. doi:10.1109/ICIIBMS.2017.8279738.

Warner, M. R., A. S. Mikheyev, and T. A. Linksvayer. 2017. “Genomic Signature of Kin Selection in an Ant with Obligately Sterile Workers.” Mol Biol Evol 34 (7): 1780–7. doi:10.1093/molbev/msx123.