Publication 2019


(a) Developmental and Evolutionary Genomics

  1. Khalturin, K., Shinzato, C., Khalturina, M., Hamada, M., Fujie, M., Koyanagi, R., Kanda, M., Goto, H., Anton-Erxleben, F., Toyokawa, M., Toshino, S., Satoh, N.
    Medusozoan genomes inform the evolution of the jellyfish body plan
    Nature Ecology & Evolution, 3(5):811-822 (2019)    
  2. Satoh, N.
    A deep dive into sea-squirt development
    Nature 571, 333-334 (2019)  
  3. Arimoto, A., Hikosaka-Katayama, T., Hikosaka, A., Tagawa, K., Inoue, T., Ueki, T., Yoshida, M., Kanda, M., Shoguchi, E., Hisata, K., Satoh, N.
    A draft genome assembly of the acoel flatworm Praesagittifera naikaiensis.
    GigaScience, 8(4) (2019) 
  4. Lu, T.M., Kanda, M., Furuya, H., Satoh, N.
    Dicyemid mesozoans: a unique parasitic lifestyle and a reduced genome
    Genome Biology and Evolution, 11:2232–2243 (2019) 
  5. Inoue, J., Satoh, N.
    ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa
    Molecular Biology and Evolution, 36: 621-631 (2019) 
  6. Inoue, J., Nakashima, K., Satoh, N.
    ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but not in Other Animal Genomes
    Genes, 10: 294 (2019)   
  7. Noda, T., Satoh, N., Asami, T.
    Heterochirality results from reduction of maternal diaph expression in a terrestrial pulmonate snail
    Zoological Letters, 2019 5:2 (2019).  
  8. Marlétaz, F., Peijnenburg, K.T.C.A., Goto, T., Satoh, N., Rokhsar, D.S.
    A new spiralian phylogeny places the enigmatic arrow worms among gnathiferans
    Current Biology, 29, 1–7. (2019)  
  9. Philippe, H., Poustka, A.J., Chiodin, M., Hoff, K.J., Dessimoz, C., Tomiczek, B., Schiffer, P.H., Muller, S., Domman, D., Horn, M., Kuhl, H., Timmermann, B., Satoh, N., Hikosaka-Katayama, T., Nakano, H., Rowe, M.L., Elphick, M.R., Thomas-Chollier, M., Hankeln, T., Mertes, F., Wallberg, A., Rast, J.P., Copley, R.R., Martinez, P., Telford M.J.
    Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria
    Current Biology, 29: 1818-1826 (2019)  
  10. Ueki, T., Arimoto, A., Tagawa, K., Satoh, N.
    Xenacoelomorph-Specific Hox Peptides: Insights into the Phylogeny of Acoels, Nemertodermatids, and Xenoturbellids
    Zoological Science, 36: 395-401. (2019) 
  11. Ishikawa, A., Kabeya, N., Ikeya, K., Kakioka, R., Cech, J.N., Osada, N., Leal, M.C., Inoue, J., Kume, M., Toyoda, A., Tezuka, A., Nagano, A.J., Yamasaki, Y.Y,. Suzuki, Y., Kokita, T., Takahashi, H., Lucek, K., Marques, D., Takehana, Y., Naruse, K., Mori, S., Monroig, O., Ladd, N., Schubert, C., Matthews, B., Peichel, C.L., Seehausen, O., Yoshizaki, G., Kitano, J.
    A key metabolic gene for recurrent freshwater colonization and radiation in fishes
    Science, 364: 886-889 (2019)  
  12. Shiraishi, A., Okuda, T., Miyasaka, N., Osugi, T., Okuno, Y., Inoue, J., & Satake, H.
    Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides.
    PNAS, 116: 7847–7856. doi:10.1073/pnas.1816640116 (2019)  
  13. Yasuoka, Y., Tando, Y., Kubokawa, K., Taira, M.
    Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus
    Zoological Letters, 5: 27 (2019)  
  14. Lu, T.M., Furuya, H., Satoh, N.
    Gene expression profiles of dicyemid life-cycle stages may explain how dispersing larvae locate new hosts.
    Zoological Letters, 5: 32 (2019) 
  15. Maiorova, M.A., Satoh, N., Khalturin, K., Odintsova, N.A.
    Transcriptomic profiling of the mussel Mytilus trossulus with a special emphasis on integrin-like genes during development
    Invertebrate Reproduction & Development, 63: 231-240 (2019) 
  16. Satou, Y., Nakmura, R., Deli, Y., Yoshida, R., Hamada, M., Fujie, M., Hisata, K., Takeda, H., Satoh, N.
    A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona.
    Genome Biology and Evolution, 1;11:3144-3157 (2020)  

    (b) Environmental Genomics

    1. Zayasu, Y., Suzuki, G.
      Comparisons of population density and genetic diversity in artificial and wild populations of an arborescent coral, Acropora yongei: implications for the efficacy of "artificial spawning hotspots"
      Restoration Ecology,
    2. Mao, Y., Satoh, N.
      A likely ancient genome duplication in the speciose reef-building coral genus, Acropora
      iScience, 13: 20-32 (2019)  
    3. Miyake, T., Aihara, N., Maeda, K., Shinzato, C., Koyanagi, R., Kobayashi, H., Yamahira, K.
      Bloodmeal host identification with inferences to feeding habits of a fish-fed mosquito, Aedes baisasi
      Scientific Reports, 9: 4002 (2019)  
    4. Hanahara, N., Higashiji, T., Shinzato, C., Koyanagi, R., Maeda, K.
      First record of Larsonella pumilus (Teleostei: Gobiidae) from Japan, with phylogenetic placement of the genus Larsonella
      Zootaxa 4695: 367-377 (2019)  

    (c) Functional Genomics

    1. Beedessee, G., Hisata, K., Roy, M.C., Van Dolah, F.M., Satoh, N., Shoguchi, E.
      Diversified secondary metabolite biosynthesis gene repertoire revealed in symbiotic dinoflagellates
      Scientific Reports, 9: 1204 (2019)  
    2. Ueki, T., Fujie, M., Romaidi, Satoh, N.
      Symbiotic bacteria associated with Ascidian vanadium accumulation identified by 16S rRNA amplicon Sequencing
      Marine Genomics, 43: 33-42 (2019)  
    3. Arimoto, A., Nishitsuji, K., Arakaki, N., Hisata, K., Shinzato, C., Satoh, N., Shoguchi, E.
      A siphonous macroalgal genome suggests convergent functions of homeobox genes in algae and land plants.
      DNA Research, 26: 183–192 (2019) 
    4. Nishitsuji, K., Arimoto, A., Higa, Y., Mekaru, M., Kawamitsu, M., Satoh, N., Shoguchi, E.
      Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway
      Scientific Reports, 9: 4607 (2019) 
    5. Arimoto, A., Nishitsuji, K., Narisoko, H., Shoguchi, E., Satoh, N.
      Differential gene expression in fronds and stolons of the siphonous macroalga, Caulerpa lentillifera
      Dev. Growth Diff, doi:10.1111/dgd.12634 (2019)  
    6. Ogawa, T., Oda-Ueda, N., Hisata, K., Nakamura, H., Chijiwa, T., Hattori, S., Isomoto, A., Yugeta, H., Yamasaki, S., Fukumaki, Y., Ohno, M., Satoh, N., Shibata, S.
      Extensive alternative mRNA splicing underlying highly divergent venom proteins of the habu snake Protobothrops flavoviridis
      Toxins, 11,581 (2019)  

    (d) Other Fields

    1. Nakashima, K., Kikuchi, S.
      Chitin-based barrier immunity and its loss predated mucus-colonization by indigenous gut microbiota. (in Japanese)
      実験医学37, 69-72 (2019)
    2. Arimoto, A.
      Exploring the mysteries of morphogenesis of sea grapes: insights from the sea grape genome. (in Japanese)
      academist journal (2019)