2021
Environmental Genomics
- Shinzato, C., Takeuchi, T., Yoshioka, Y., Tada, I., Kanda, M., Broussard, C., Iguchi, A., Kusakabe, M., Marin, F., Satoh, N., Inoue, M.
Whole-genome sequencing highlights conservative genomic strategies of a stress-tolerant, long-lived scleractinian coral, Porites australiensis Vaughan, 1918.
GBE, 1;13(12):evab270. doi: 10.1093/gbe/evab270. - Kawamura, K., Sekida, S., Nishitsuji, K., Shoguchi, E., Hisata, K., Fujiwara, S., Satoh, N.
In vitro symbiosis of reef-building coral cells with photosynthetic dinoflagellates
frontiers in Marine Science, doi:10.3389/fmars.2021.706308 (2021) - Shinzato, C., Khalturin, K., Inoue, J., Zayasu, Y., Kanda, M., Kawamitsu, M., Yoshioka, Y., Yamashita, H., Suzuki, G., Satoh, N.
Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes
Molecular Biology and Evolution, 38: 16-30. (2021) - Satoh, N., Kinjo, K., Kohei Shintaku, K., Kezuka, D., Ishimori, H., Yokokura, A., Hagiwara, K., Hisata, K., Kawamitsu, M., Koizumi, K., Shinzato, C., Zayasu, Y.
Color morphs of the coral, Acropora tenuis, show different responses to environmental stress and different expression profiles of fluorescent-protein genes
G3: Genes|Genomes|Genetics, 11(2), jkab018 (2021) - Shinzato, C., Narisoko, H., Nishitsuji, N., Nagata, T., Satoh, N., Inoue, J.
Novel mitochondrial DNA markers for Scleractinian corals and generic-level environmental DNA metabarcoding.
Front. Mar. Sci. 8:758207. (2021) doi: 10.3389/fmars.2021.758207 - Kawamura, K., Nishitsuji, K., Shoguchi, E., Fujiwara, S., Satoh, N.
Establishing sustainable cell lines of a coral, Acropora tenuis
Marine Biotechnology, doi: 10.1007/s10126-021-10031-w - Mason, B., Cooke, I., Moya, A., Augustin, R., Lin, M., Satoh, N., Bosch, T., Bourne, D., Hayward, D., Andrade, N., Forêt, S., Ying, H., Ball, E., Miller, D.J.
AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones
Developmental and Comparative Immunology, 114: 103866. (2021) - Zayasu, Y., Takeuchi, T., Nagata, T., Kanai, M., Fujie, M., Kawamitsu, M. Chinen, W. Shinzato, C., Satoh, N.
Genome-wide SNP genotyping reveals hidden population structure of an acroporid species at a subtropical coral island: Implications for coral restoration.
Aquatic Conservation: Marine and Freshwater Ecosystems, 1–11. (2021) - Sassa, M., Takagi, T., Kinjo, A., Yoshioka, Y., Zayasu, Y., Shinzato, C., Kanda, S., Murakami-Sugihara, N., Shirai, K., Inoue, K.
Divalent metal transporter-related protein restricts animals to marine habitats
Communication Biology 4, 463 (2021)
Developmental and Evolutionary Genomics
- Satoh, N., Tominaga, H., Kiyomoto, M., Hisata, K., Inoue, J., Nishitsuji, K.
A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum
Front. Cell Dev. Biol., doi:10.3389/fcell.2021.696875 - Kashimoto, R., Hisata, K., Shinzato, C., Satoh, N., Shoguchi, E.
Expansion and diversification of fluorescent protein genes in fifteen Acropora species during evolution of acroporid corals
Genes, 12:397 - Satou, Y., Sato, A., Yasuo, H., Mihirogi, Y., Bishop, J., Fujie, M., Kawamitsu, M., Hisata, K., Satoh, N.
Chromosomal inversion polymorphisms in two sympatric ascidian lineages
Genome Bioogy and Evolution, evab068
Functional Genomics
- Takeuchi, T., Fujie, M., Koyanagi, R., Plasseraud, L., Ziegler-Devin, I., Brosse, N., Broussard, C., Satoh, N., Marin, F.
The ‘Shellome’ of the Crocus Clam Tridacna crocea Emphasizes Essential Components of Mollusk Shell Biomineralization
Front. Genet., doi:10.3389/fgene.2021.674539 (2021) - Maeda, T., Takahashi, S., Yoshida, T., Shimamura, S., Takaki, Y., Nagai, Y., Toyoda, A., Suzuki, Y., Arimoto, A., Ishii, H., Satoh, N., Nishiyama, T., Hasebe, M., Maruyama, T., Minagawa, J., Obokata, J., Shigenobu, S.
Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus
eLife, 10:e60176. doi: 10.7554/eLife.60176. - Patwary, Z.P., Paul, N.A., Nishitsuji, K., Campbell, A.H., Shoguchi, E., Zhao, M., Cummins, S.F.
Application of omics research in seaweeds with a focus on red seaweeds
Brief Funct Genomics, elab023. doi: 10.1093/bfgp/elab023. - Okubo, S., Ena, E., Okuda, A., Kozone, I., Hashimoto, J., Nishitsuji, Y., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K.
Identification of functional cytochrome P450 and ferredoxin from Streptomyces sp. EAS-AB2608 by transcriptional analysis and their heterologous expression.
Appl Microbiol Biotechnol, 105(10):4177-4187. doi: 10.1007/s00253-021-11304-z. - Yoneda, Y., Yamamoto, K., Makino, A., Tanaka, Y., Meng, X.Y., Hashimoto, J., Shin-ya, K., Satoh, N., Fujie, M., Toyama, T., Mori, K., Ike, M., Morikawa, M., Kamagata, Y., Tamaki, H.
Novel Plant-Associated Acidobacteria Promotes Growth of Common Floating Aquatic Plants, Duckweeds.
Microorganisms. 9(6):1133. https://doi.org/10.3390/microorganisms9061133 - Kawato, S., Nishitsuji, K., Arimoto, A., Hisata, K., Kawamitsu, M., Nozaki, R., Kondo, H., Shinzato, C., Ohira, T., Satoh, N., Shoguchi, E., Hirono, I.
Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus
G3, 5;11(11):jkab268 (2021) - Shoguchi, E.
Gene clusters for biosynthesis of mycosporine-like amino acids in dinoflagellate nuclear genomes: Possible recent horizontal gene transfer between species of Symbiodiniaceae (Dinophyceae)
Journal of Phycology. - Maeda, K., Shinzato, C., Koyanagi, R., Kunishima, T., Kobayashi, H., Satoh, N., Palla, H.P.
Two new species of Rhinogobius (Gobiiformes: Oxudercidae) from Palawan, Philippines, with their phylogenetic placement
Zootaxa, 5068(1), 81–98.
Sequencing collaboration