Publications 2008

  1. Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutie'rrez EL, Dubchak I, Garcia-Ferna'ndez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS.
    The amphioxus genome and the evolution of the chordate karyotype.
    Nature, 453: 1064-1071(2008)
  2. Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, Shapiro H, Grigoriev IV, Buss LW, Schierwater B, Dellaporta SL, Rokhsar DS.
    The Trichoplax genome and the nature of placozoans.
    Nature, 454: 955-960(2008)
  3. Harada Y, Takagaki Y, Sunagawa M, Saito T, Yamada L, Taniguchi H, Shoguchi E, Sawada H.
    Mechanism of self-sterility in a hermaphroditic chordate.
    Science, 320:548-550 (2008)
  4. Christiaen L, Davidson B, Kawashima T, Powell W, Nolla H, Vranizan K, Levine M.
    The Transcription/Migration Interface in Heart Precursors of Ciona intestinalis.
    Science, 320:1349-1352 (2008)
  5. Holland LZ, Albalat R, Azumi K, Benito-Gutierrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernandez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallbook F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW.
    The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
    Genome Res., 18:1100-1111 (2008)
  6. Shoguchi E, Hamaguchi M, and Satoh N..
    Genome-wide network of regulatory genes for construction of a chordate embryo.
    Dev. Biol., 316: 498-509 (2008)
  7. Jeffery WR, Chiba T, Krajka FR, Deyts C, Satoh N, Joly JS.
    Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: insights into the ancestry and evolution of the neural crest.
    Dev. Biol., 324:152-160 (2008)
  8. Satoh N.
    An aboral-dorsalization hypothesis for chordate origin.
    Genesis, 46:614-622 (2008)
  9. Aoyama M, Kawada T, Fujie M, Hotta K, Sakai T, Sekiguchi T, Oka K, Satoh N, Satake H.
    A novel biological role of tachykinins as an up-regulator of oocyte growth: identification of an evolutionary origin of tachykininergic functions in the ovary of the ascidian, Ciona intestinalis.
    Endocrinology, 149:4346-4356 (2008)
  10. Satake H, Aoyama M, Kawada T, Sekiguchi T, Sakai T, Fujie M, Satoh N.
    Neuropeptides and their receptors of the protochordate, Ciona intestinalis: the evolutionary origin of vertebrate neuropeptides.
    Acta Biol. Hung., 59 Suppl:237-239 (2008)
  11. Satou Y, Mineta K, Ogasawara M, Sasakura Y, Shoguchi E, Ueno K, Yamada L, Matsumoto J, Wasserscheid J, Dewar K, Wiley GB, Macmil SL, Roe BA, Zeller RW, Hastings KE, Lemaire P, Lindquist E, Endo T, Hotta K, Inaba K.
    Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations.
    Genome Biol., 9:R152 (2008)
  12. Satou Y, Wada S, Sasakura Y, Satoh N.
    Regulatory genes in the ancestral chordate genomes.
    Dev. Gen. Evol., 218:715-21 (2008)
  13. Yu Jr-K, Wang MC, Shin T, Kohara Y, Holland LZ, Satoh N, Satou Y.
    A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae.
    Dev. Gen. Evol., 218:723-727 (2008)
  14. Shinzato C, Iguchi A, Hayward DC, Technau U, Ball EE, Miller DJ.
    Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa.
    BMC Evol. Biol., 8:311 (2008)
  15. Wada S, Hamada M, Kobayashi K, Satoh N.
    Novel genes involved in canonical Wnt/beta-catenin signaling pathway in early Ciona intestinalis embryos.
    Dev Growth Differ., 50:215-227 (2008)
  16. Kawashima T, Hamada M, Shinzato C, Satoh N, Shoguchi E.
    New outlooks on evolutionary studies brought from ten years of animal genome decipherment (動物ゲノム解読の10年がもたらした新しい進化観).
    Kagaku, 78:1070-1079 (2008)