2020

(a) Developmental and Evolutionary Genomics

  1. Hozumi, A., Matsunobu, S., Mita, K., Treen, N., Sugihara, T., Horie, T., Sakuma, T., Yamamoto, T., Shiraishi, A., Hamada, M., Satoh, N., Sakurai, K., Satake, Honoo, Sasakura, Y.
    GABA-induced GnRH release triggers chordate metamorphosis
    Current Biology, 30:1555-1561 (2020)
  2. Onuma, T.A., Hayashi, M., Gyoja, F., Kishi, K., Wang, K., Nishida, H.
    A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
    Proc Natl Acad Sci U S A., 117(8):4188-4198 (2020)
  3. Ilsley, G.R., Suyama, R., Noda, T., Satoh, N., Luscombe, N.M.
    Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq
    Scientific Reports, 10:4961 (2020) ​​
  4. Simakov, O., Marlétaz, F., Yue, J.X., O'Connell, B., Jenkins, J., Brandt, A., Calef, R., Tung, C.H., Huang, T.K., Schmutz, J., Satoh, N., Yu, J.K., Putnam, N.H., Green, R.E., Rokhsar, D.S.
    Deeply conserved syntheny resolves early events in vertebrate evolution
    Nature Ecology & Evolution, 4(6): 820–830 (2020)
  5. Yasuoka, Y.
    Morphogenetic mechanisms forming the notochord rod: The turgor pressure‐sheath strength model.
    Develop Growth Differ. 62(6):379-390. DOI: 10.1111/dgd.12665​​ 
  6. Li, K.L., Nakashima, K., Inoue, J., Satoh, N.
    Phylogenetic analyses of Glycosyl Hydrolase Family 6 genes in tunicates: Possible horizontal transfer
    Genes 11, 937, doi:10.3390/genes11080937 
  7. Hamada, M., Satoh, N., Khalturin, K.
    A Reference Genome from the symbiotic hydrozoan, Hydra viridissima
    G3: Genes|Genomes|Genetics in press (2020)
  8. Mason, B., Cooke, I., Moya, A., Augustin, R., Lin, M., Satoh, N., Bosch, T., Bourne, D., Hayward, D., Andrade, N., Forêt, S., Ying, H., Ball, E., Miller, D.J.
    AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones
    Developmental and Comparative Immunology, in press.

 

(b) Enviromental Genomics

  1. Shinzato, C., Khalturin, K., Inoue, J., Zayasu, Y., Kanda, M., Kawamitsu, M., Yoshioka, Y., Yamashita, H., Suzuki, G., Satoh, N.
    Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes
    Molecular Biology and Evolution, msaa216.  
  2. Shoguchi, E., Yoshioka, Y., Shinzato, C., Arimoto, A., Bhattacharya, D., Satoh, N.
    Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera
    Genome Biology and Evolution, 12:203-209 (2020)
  3. Inoue, J., Hisata, K., Yasuda, N., Satoh, N.
    An investigation into the genetic history of Japanese populations of three starfish, Acanthaster planci, Linckia laevigata, and Asterias amurensis, based on complete mitochondrial DNA sequences
    G3: Genes|Genomes|Genetics, 10: 2519-2528 (2020)
  4. Takagi, T., Yoshioka, Y., Zayasu, Y., Satoh, N., Shinzato, C.
    Transcriptome analyses of immune system behaviors in primary polyp of coral Acropora digitifera exposed to the bacterial pathogen Vibrio coralliilyticus under thermal loading
    Marine Biotechnology in press (2020)  
  5. Selmoni, O., Lecellier, G., Ainley, L., Collin, A., Doucet, R., Dubousquet, V., Feremaito, H., Waia, E.I., Kininmonth, S.J., Magalon, H., Malimali, S., Maugateau, A., Meibom, A., Mosese, S., Rene-Trouillefou, M., Satoh, N., van Oppen, M.J.H., Xozame, A., Yekawene, M., Joost, S., Berteaux-Lecellier, V.
    Using modern conservation tools for innovative management of coral reefs: the MANACO Consortium Journal: Frontiers in Marine Science, section Marine Conservation and Sustainability
    Frontiers in Marine Science, 7:609 

 

(c) Functional Genomics

  1. Takeuchi, T., Masaoka, T., Aoki, H., Koyanagi, R., Fujie, M., Satoh, N.
    Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
    Evolutionary Applications, 13: 838–854 (2020) 
  2. Choi, J.W., Graf, L., Peters, A.F., Cock, J.M., Nishitsuji, K., Arimoto, A., Shoguchi, E., Nagasato, C., Choi, C.G., Yoon, H.S.
    Organelle inheritance and genome architecture variation in isogamous brown algae.
    Sci Rep.  10:2048. doi: 10.1038/s41598-020-58817-7 
  3. Ishikawa, A., Shimizu, K., Isowa, Y., Takeuchi, T., Zhao, R., Kito, K., Fujie, M., Satoh, N., Endo, K.
    Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology.
    Scientific Reports, 10:9768. ​​
  4. Nishitsuji, K., Arimoto, A., Yonashiro, Y., Hisata, K., Fujie, M., Kawamitsu, M., Shoguchi, E., Satoh, N.
    Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
    BMC Genomics, 21: 422 (2020)
  5. Hashimoto, T., Kozone, I., Hashimoto, J., Suenaga, H., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K.
    Identification, Cloning and Heterologous Expression of Biosynthetic Gene Cluster for Desertomycin
    J Antibiot , 73(9):650-654 (2020).

 

(d) Other Fields

  1. Gelineau, Y., Saget, M., Brault, V., Anamparéla, B., Aboulker, C., Martinet, J., Maeda, K., Feutry P.
    Biology of jungle perch, Kuhlia rupestris, identification of threats and knowledge gaps to improve local and global management
    Cybium 44: 45–55 (2020) ​​