2020
(a) Developmental and Evolutionary Genomics
- Hozumi, A., Matsunobu, S., Mita, K., Treen, N., Sugihara, T., Horie, T., Sakuma, T., Yamamoto, T., Shiraishi, A., Hamada, M., Satoh, N., Sakurai, K., Satake, Honoo, Sasakura, Y.
GABA-induced GnRH release triggers chordate metamorphosis
Current Biology, 30:1555-1561 (2020) - Onuma, T.A., Hayashi, M., Gyoja, F., Kishi, K., Wang, K., Nishida, H.
A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
Proc Natl Acad Sci U S A., 117(8):4188-4198 (2020) - Ilsley, G.R., Suyama, R., Noda, T., Satoh, N., Luscombe, N.M.
Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq
Scientific Reports, 10:4961 (2020) - Simakov, O., Marlétaz, F., Yue, J.X., O'Connell, B., Jenkins, J., Brandt, A., Calef, R., Tung, C.H., Huang, T.K., Schmutz, J., Satoh, N., Yu, J.K., Putnam, N.H., Green, R.E., Rokhsar, D.S.
Deeply conserved syntheny resolves early events in vertebrate evolution
Nature Ecology & Evolution, 4(6): 820–830 (2020) - Yasuoka, Y.
Morphogenetic mechanisms forming the notochord rod: The turgor pressure‐sheath strength model.
Develop Growth Differ. 62(6):379-390. DOI: 10.1111/dgd.12665 - Li, K.L., Nakashima, K., Inoue, J., Satoh, N.
Phylogenetic analyses of Glycosyl Hydrolase Family 6 genes in tunicates: Possible horizontal transfer
Genes 11, 937, doi:10.3390/genes11080937 - Hamada, M., Satoh, N., Khalturin, K.
A Reference Genome from the symbiotic hydrozoan, Hydra viridissima
G3: Genes|Genomes|Genetics, 10(11):3883-3895. (2020) - Nesterenko, M.A., Starunov, V.V., Shchenkov, S.V., Maslova, A.R., Denisova, S.A., Granovich, A.I., Dobrovolskij, A.A., Khalturin, K.
Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
Parasites & Vectors volume 13, Article number: 559 (2020) - Zhao, R., Takeuchi, T., Koyanagi, R., Villar-Briones, A., Yamada, L., Sawada, H., Ishikawa, A., Iwanaga, S., Nagai, K., Che, Y., Satoh, N., Endo, K.
Phylogenetic comparisons reveal mosaic histories of larval and adult shell matrix protein deployment in pteriomorph bivalves.
Sci Rep 10, 22140 (2020).
(b) Environmental Genomics
- Shoguchi, E., Yoshioka, Y., Shinzato, C., Arimoto, A., Bhattacharya, D., Satoh, N.
Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera
Genome Biology and Evolution, 12:203-209 (2020) - Inoue, J., Hisata, K., Yasuda, N., Satoh, N.
An investigation into the genetic history of Japanese populations of three starfish, Acanthaster planci, Linckia laevigata, and Asterias amurensis, based on complete mitochondrial DNA sequences
G3: Genes|Genomes|Genetics, 10: 2519-2528 (2020) - Takagi, T., Yoshioka, Y., Zayasu, Y., Satoh, N., Shinzato, C.
Transcriptome analyses of immune system behaviors in primary polyp of coral Acropora digitifera exposed to the bacterial pathogen Vibrio coralliilyticus under thermal loading
Marine Biotechnology, 22:748-759. (2020) - Selmoni, O., Lecellier, G., Ainley, L., Collin, A., Doucet, R., Dubousquet, V., Feremaito, H., Waia, E.I., Kininmonth, S.J., Magalon, H., Malimali, S., Maugateau, A., Meibom, A., Mosese, S., Rene-Trouillefou, M., Satoh, N., van Oppen, M.J.H., Xozame, A., Yekawene, M., Joost, S., Berteaux-Lecellier, V.
Using modern conservation tools for innovative management of coral reefs: the MANACO Consortium Journal: Frontiers in Marine Science, section Marine Conservation and Sustainability
Frontiers in Marine Science, 7:609 - Shoguchi, E., Beedessee, G., Hisata, K., Tada, I., Narisoko, H., Satoh, N., Kawachi, M., Shinzato, C.
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis
Genome Biology and Evolution, 13:evaa235. - Yoshioka, Y., Yamashita, H., Suzuku, G., Zayasu, Y., Tada I., Kanda, M., Satoh, N., Shoguchi, E., Shinzato, C.
Whole-genome transcriptome analyses of native symbionts reveal host coral genomic novelties for establishing coral-algae symbioses.
Genome Biology and Evolution, 13:evaa240.
(c) Functional Genomics
- Takeuchi, T., Masaoka, T., Aoki, H., Koyanagi, R., Fujie, M., Satoh, N.
Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Evolutionary Applications, 13: 838–854 (2020) - Choi, J.W., Graf, L., Peters, A.F., Cock, J.M., Nishitsuji, K., Arimoto, A., Shoguchi, E., Nagasato, C., Choi, C.G., Yoon, H.S.
Organelle inheritance and genome architecture variation in isogamous brown algae.
Sci Rep. 10:2048. doi: 10.1038/s41598-020-58817-7 - Ishikawa, A., Shimizu, K., Isowa, Y., Takeuchi, T., Zhao, R., Kito, K., Fujie, M., Satoh, N., Endo, K.
Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology.
Scientific Reports, 10:9768. - Nishitsuji, K., Arimoto, A., Yonashiro, Y., Hisata, K., Fujie, M., Kawamitsu, M., Shoguchi, E., Satoh, N.
Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
BMC Genomics, 21: 422 (2020) - Hashimoto, T., Kozone, I., Hashimoto, J., Suenaga, H., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K.
Identification, Cloning and Heterologous Expression of Biosynthetic Gene Cluster for Desertomycin
J Antibiot , 73(9):650-654 (2020). - Beedessee, G., Kubota, T., Arimoto, A., Nishitsuji, K., Waller, R.F., Hisata, K., Yamasaki, S., Satoh, N., Kobayashi, J., Shoguchi, E.
Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate
BMC Biology, 18, Article number: 139 (2020) - Nogawa, T., Terai, A., Amagai, K., Hashimoto, J., Futamura, Y., Okano, A., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K., Osada, H., Takahashi, S.
Heterologous Expression of the Biosynthetic Gene Cluster for Verticilactam and Identification of Analogues.
J Nat Prod. doi: 10.1021/acs.jnatprod.0c00755.
(d) Other Fields