Publication 2019
(a) Developmental and Evolutionary Genomics
- Satoh, N.
A deep dive into sea-squirt development
Nature 571, 333-334 (2019) - Arimoto, A., Hikosaka-Katayama, T., Hikosaka, A., Tagawa, K., Inoue, T., Ueki, T., Yoshida, M., Kanda, M., Shoguchi, E., Hisata, K., Satoh, N.
A draft genome assembly of the acoel flatworm Praesagittifera naikaiensis.
GigaScience, 8(4) (2019) - Lu, T.M., Kanda, M., Furuya, H., Satoh, N.
Dicyemid mesozoans: a unique parasitic lifestyle and a reduced genome
Genome Biology and Evolution, 11:2232–2243 (2019) - Inoue, J., Satoh, N.
ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa
Molecular Biology and Evolution, 36: 621-631 (2019) - Inoue, J., Nakashima, K., Satoh, N.
ORTHOSCOPE Analysis Reveals the Presence of the Cellulose Synthase Gene in All Tunicate Genomes but not in Other Animal Genomes
Genes, 10: 294 (2019) - Noda, T., Satoh, N., Asami, T.
Heterochirality results from reduction of maternal diaph expression in a terrestrial pulmonate snail
Zoological Letters, 2019 5:2 (2019). - Marlétaz, F., Peijnenburg, K.T.C.A., Goto, T., Satoh, N., Rokhsar, D.S.
A new spiralian phylogeny places the enigmatic arrow worms among gnathiferans
Current Biology, 29, 1–7. (2019) - Philippe, H., Poustka, A.J., Chiodin, M., Hoff, K.J., Dessimoz, C., Tomiczek, B., Schiffer, P.H., Muller, S., Domman, D., Horn, M., Kuhl, H., Timmermann, B., Satoh, N., Hikosaka-Katayama, T., Nakano, H., Rowe, M.L., Elphick, M.R., Thomas-Chollier, M., Hankeln, T., Mertes, F., Wallberg, A., Rast, J.P., Copley, R.R., Martinez, P., Telford M.J.
Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria
Current Biology, 29: 1818-1826 (2019) - Ueki, T., Arimoto, A., Tagawa, K., Satoh, N.
Xenacoelomorph-Specific Hox Peptides: Insights into the Phylogeny of Acoels, Nemertodermatids, and Xenoturbellids
Zoological Science, 36: 395-401. (2019) - Ishikawa, A., Kabeya, N., Ikeya, K., Kakioka, R., Cech, J.N., Osada, N., Leal, M.C., Inoue, J., Kume, M., Toyoda, A., Tezuka, A., Nagano, A.J., Yamasaki, Y.Y,. Suzuki, Y., Kokita, T., Takahashi, H., Lucek, K., Marques, D., Takehana, Y., Naruse, K., Mori, S., Monroig, O., Ladd, N., Schubert, C., Matthews, B., Peichel, C.L., Seehausen, O., Yoshizaki, G., Kitano, J.
A key metabolic gene for recurrent freshwater colonization and radiation in fishes
Science, 364: 886-889 (2019) - Shiraishi, A., Okuda, T., Miyasaka, N., Osugi, T., Okuno, Y., Inoue, J., & Satake, H.
Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides.
PNAS, 116: 7847–7856. doi:10.1073/pnas.1816640116 (2019) - Yasuoka, Y., Tando, Y., Kubokawa, K., Taira, M.
Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus
Zoological Letters, 5: 27 (2019) - Lu, T.M., Furuya, H., Satoh, N.
Gene expression profiles of dicyemid life-cycle stages may explain how dispersing larvae locate new hosts.
Zoological Letters, 5: 32 (2019) - Maiorova, M.A., Satoh, N., Khalturin, K., Odintsova, N.A.
Transcriptomic profiling of the mussel Mytilus trossulus with a special emphasis on integrin-like genes during development
Invertebrate Reproduction & Development, 63: 231-240 (2019) - Satou, Y., Nakmura, R., Deli, Y., Yoshida, R., Hamada, M., Fujie, M., Hisata, K., Takeda, H., Satoh, N.
A nearly-complete genome of Ciona intestinalis type A (C. robusta) reveals the contribution of inversion to chromosomal evolution in the genus Ciona.
Genome Biology and Evolution, 1;11:3144-3157 (2020)
(b) Environmental Genomics
- Zayasu, Y., Suzuki, G.
Comparisons of population density and genetic diversity in artificial and wild populations of an arborescent coral, Acropora yongei: implications for the efficacy of "artificial spawning hotspots"
Restoration Ecology, https://doi.org/10.1111/rec.12857 - Mao, Y., Satoh, N.
A likely ancient genome duplication in the speciose reef-building coral genus, Acropora
iScience, 13: 20-32 (2019) - Miyake, T., Aihara, N., Maeda, K., Shinzato, C., Koyanagi, R., Kobayashi, H., Yamahira, K.
Bloodmeal host identification with inferences to feeding habits of a fish-fed mosquito, Aedes baisasi
Scientific Reports, 9: 4002 (2019) - Hanahara, N., Higashiji, T., Shinzato, C., Koyanagi, R., Maeda, K.
First record of Larsonella pumilus (Teleostei: Gobiidae) from Japan, with phylogenetic placement of the genus Larsonella
Zootaxa 4695: 367-377 (2019)
(c) Functional Genomics
- Beedessee, G., Hisata, K., Roy, M.C., Van Dolah, F.M., Satoh, N., Shoguchi, E.
Diversified secondary metabolite biosynthesis gene repertoire revealed in symbiotic dinoflagellates
Scientific Reports, 9: 1204 (2019) - Ueki, T., Fujie, M., Romaidi, Satoh, N.
Symbiotic bacteria associated with Ascidian vanadium accumulation identified by 16S rRNA amplicon Sequencing
Marine Genomics, 43: 33-42 (2019) - Arimoto, A., Nishitsuji, K., Arakaki, N., Hisata, K., Shinzato, C., Satoh, N., Shoguchi, E.
A siphonous macroalgal genome suggests convergent functions of homeobox genes in algae and land plants.
DNA Research, 26: 183–192 (2019) - Nishitsuji, K., Arimoto, A., Higa, Y., Mekaru, M., Kawamitsu, M., Satoh, N., Shoguchi, E.
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway
Scientific Reports, 9: 4607 (2019) - Arimoto, A., Nishitsuji, K., Narisoko, H., Shoguchi, E., Satoh, N.
Differential gene expression in fronds and stolons of the siphonous macroalga, Caulerpa lentillifera
Dev. Growth Diff, doi:10.1111/dgd.12634 (2019) - Ogawa, T., Oda-Ueda, N., Hisata, K., Nakamura, H., Chijiwa, T., Hattori, S., Isomoto, A., Yugeta, H., Yamasaki, S., Fukumaki, Y., Ohno, M., Satoh, N., Shibata, S.
Extensive alternative mRNA splicing underlying highly divergent venom proteins of the habu snake Protobothrops flavoviridis
Toxins, 11,581 (2019)
(d) Other Fields
- Nakashima, K., Kikuchi, S.
Chitin-based barrier immunity and its loss predated mucus-colonization by indigenous gut microbiota. (in Japanese)
実験医学37, 69-72 (2019) - Arimoto, A.
Exploring the mysteries of morphogenesis of sea grapes: insights from the sea grape genome. (in Japanese)
academist journal (2019)