2022
Developmental and Evolutionary Genomics
- Khalturin, K., Shunatova, N., Shchenkov, S., Sasakura, Y., Kawamitsu, M., Satoh, N.
Polyzoa is back: The effect of complete gene sets on the placement of Ectoprocta and Entoprocta
Science Advances, 8(26):eabo4400. (2022) - Satoh, N., Hisata, K., Foster, S., Morita, S., Nishitsuji, K., Oulhen, N., Tominaga, H., Wessel, G.
A single-cell RNA-seq analysis of Brachyury-expressing cell clusters suggests a morphogenesis-associated signal center of oral ectoderm in sea urchin embryos
Developmental Biology, 483: 128-142 (2022) - Humphreys, T., Weiser, K., Arimoto, A., Sasaki, A., Uenishi, G., Fujimoto, B., Kawashima, T., Taparra, K., Molnar, J., Satoh, N., Marikawa, Y., Tagawa, K.
Ancestral stem cell reprogramming genes active in hemichordate regeneration
Frontiers in Ecology and Evolution, 10: 769433 (2022) - Kashimoto, R., Tanimoto, M., Miura, S., Satoh, N., Laudet, V., Khalturin, K.
Transcriptomes of giant sea anemones from Okinawa as a tool for understanding their phylogeny and symbiotic relationships with anemonefish
Zoological Science, 39(4) (2022)
Environmental Genomics
- Yasuda, N., Inoue, J., Hall, M.R., Nair, M.R., Adjeroud, M., Miguel D. Fortes, M.D., Nishida, M., Tuivavalagi, N., Ravago-Gotanco, R., Forsman, Z.H., Soliman, T., Koyanagi, R., Hisata, K., Motti, C.A., Satoh, N.
Two Hidden mtDNA-Clades of Crown-of-Thorns Starfish in the Pacific Ocean
Frontiers Marine Science, 9: 831240, doi: 10.3389/fmars.2022.831240 (2022) - Shimakawa, G., Shoguchi, E., Burlacot, A., Ifuku, K., Che, Y., Kumazawa, M., Tanaka, K., Nakanishi, S.
Coral symbionts evolved a functional polycistronic flavodiiron gene.
Photosynth Res. 151(1):113-124. doi: 10.1007/s11120-021-00867-7. (2022) - Tsuchiya, K., Zayasu, Y., Nakajima, Y., Arakaki, N., Suzuki, G., Satoh, N., Shinzato, C.
Genomic analysis of a reef-building coral, Acropora digitifera, reveals complex population structure and a migration network in the Nansei Islands, Japan
Molecular Ecology, 31, 5270– 5284. (2022) - Kitchen, S.,A., Jiang, D., Harii, S., Satoh, N., Weis, V.M., and Shinzato, C.
Coral larvae suppress the heat stress response during the onset of symbiosis thereby decreasing their odds of survival
Molecular Ecology, 31:5813-5830. (2022) - Kiyono, S., Miyashita, S., Yamaguchi, K., Saito, I., Saito, Y., Manta, S., Ishikawa, M., Narita, M., Watanabe, T., Ito, R., Taguchi, M., Furukawa, R., Ikeuchi, A., Matsuo, K., Kurita, G., Kumagai, T., Shirakashi, S., Ogawa, K., Sakamoto, K., Koyanagi, R., Satoh, N., Sasaki, M., Maezawa, T., Ichikawa-Seki, M., Kobayashi. K.
Sex-inducing effects toward planarians widely present among parasitic flatworms
iScience, 26:105776 (2022)
Functional Genomics
- Takeuchi, T., Suzuki, Y., Watabe, S., Nagai, K., Tetsuji Masaoka, T., Fujie, M., Kawamitsu, M., Satoh, N., Myers, E.W.
A high-quality, haplotype-phased genome reconstruction reveals unexpected 3 haplotype diversity in a pearl oyster
DNA Research, 29:dsac035. (2022) - Isomoto, A., Shoguchi, E., Hisata, K., Inoue, J., Inaba, K., Satoh, N., Ogawa, T., Hiroki Shibata, H.
Active Expression of Genes for Protein Modification Enzymes in Habu Venom Glands
toxins, 14, 300. (2022) - Nishitsuji, K., Nishitsuji, Y., Yonashiro, Y., Satoh, N.
Development of DNA markers that distinguish male and female haploid germlings of the brown alga, Cladosiphon okamuranus
Phycological Research, 70: 160-166. - Shimizu, K., Takeuchi, T., Negishi, L., Kurumizaka, H., Kuriyama, I., Endo, K., Suzuki, M.
Evolution of Epidermal Growth Factor (EGF)-like and Zona Pellucida Domains Containing Shell Matrix Proteins in Mollusks.
Mol Biol Evol. 39(7):msac148. doi: 10.1093/molbev/msac148. (2022) - Adi, T.K., Fujie, M., Satoh, N., Ueki, T.
The acidic amino acid-rich C-terminal domain of VanabinX enhances reductase activity, attaining 1.3- to 1.7-fold vanadium reduction
Biochemistry and Biophysics Reports, 32, 101349 (2022) - Boutet, I., Alves Monteiro, H. J., Baudry, L., Takeuchi, T., Bonnivard, E., Billoud, B., Farhat, S., Gonzales-Araya, R., Salaun, B., Andersen, A. C., Toullec, J.-Y., Lallier, F. H., Flot, J.-F., Guiglielmoni, N., Guo, X., Li, C., Allam, B., Pales-Espinosa, E., Hemmer-Hansen, J., Moreau, P., Marbouty, M., Koszul, R., Tanguy, A.
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture
Evolutionary Applications, 00, 1– 19.
Sequencing Collaboration
- Yamamoto, K., Yoneda, Y., Makino, A., Tanaka, Y., Meng, X.Y, Hashimoto, Y., Shin-ya, K., Satoh, N., Fujie, M., Toyama, T., Mori, K., Ike, M., Morikawa, M., Kamagata, Y., and Tamaki H.
Draft genome sequence of Bryobacteraceae strain F-183
Microbiology Resource Announcements, 11(1):e0045321. doi: 10.1128/mra.00453-21. (2022) - Yamamoto, K., Yoneda, Y., Makino, A., Tanaka, Y., Meng, X.Y, Hashimoto, Y., Shin-ya, K., Satoh, N., Fujie, M., Toyama, T., Mori, K., Ike, M., Morikawa, M., Kamagata, Y., and Tamaki H.
Complete Genome Sequence of Luteitalea sp. Strain TBR-22.
Microbiol Resour Announc. 11(2):e0045521. doi: 10.1128/mra.00455-21. (2022) - Choirunnisa, A. R., Arima, K., Abe, Y., Kagaya, N., Kudo, K., Suenaga, H., Hashimoto, J., Fujie, M., Satoh, N., Shin-ya, K., Matsuda, K., Wakimoto, T.
New azodyrecins identified by a genome mining-directed reactivity-based screening
Beilstein J. Org. Chem. 18, 1017–1025. https://doi.org/10.3762/bjoc.18.102