2022

Developmental and Evolutionary Genomics

  1. Khalturin, K., Shunatova, N., Shchenkov, S., Sasakura, Y., Kawamitsu, M., Satoh, N.
    Polyzoa is back: The effect of complete gene sets on the placement of Ectoprocta and Entoprocta
    Science Advances, 8(26):eabo4400. (2022) 
  2. Satoh, N., Hisata, K., Foster, S., Morita, S., Nishitsuji, K., Oulhen, N., Tominaga, H., Wessel, G.
    A single-cell RNA-seq analysis of Brachyury-expressing cell clusters suggests a morphogenesis-associated signal center of oral ectoderm in sea urchin embryos
    Developmental Biology, 483: 128-142 (2022) 
  3. Humphreys, T., Weiser, K., Arimoto, A., Sasaki, A., Uenishi, G., Fujimoto, B., Kawashima, T., Taparra, K., Molnar, J., Satoh, N., Marikawa, Y., Tagawa, K.
    Ancestral stem cell reprogramming genes active in hemichordate regeneration
    Frontiers in Ecology and Evolution, 10: 769433 (2022)   
  4. Kashimoto, R., Tanimoto, M., Miura, S., Satoh, N., Laudet, V., Khalturin, K.
    Transcriptomes of giant sea anemones from Okinawa as a tool for understanding their phylogeny and symbiotic relationships with anemonefish
    Zoological Science, 39(4) (2022)  

Environmental Genomics

  1. Yasuda, N., Inoue, J., Hall, M.R., Nair, M.R., Adjeroud, M., Miguel D. Fortes, M.D., Nishida, M., Tuivavalagi, N., Ravago-Gotanco, R., Forsman, Z.H., Soliman, T., Koyanagi, R., Hisata, K., Motti, C.A., Satoh, N.
    Two Hidden mtDNA-Clades of Crown-of-Thorns Starfish in the Pacific Ocean
    Frontiers Marine Science, 9: 831240, doi: 10.3389/fmars.2022.831240 (2022)  
  2. Shimakawa, G., Shoguchi, E., Burlacot, A., Ifuku, K., Che, Y., Kumazawa, M., Tanaka, K., Nakanishi, S.
    Coral symbionts evolved a functional polycistronic flavodiiron gene.
    Photosynth Res. 151(1):113-124. doi: 10.1007/s11120-021-00867-7. (2022) 
  3. Tsuchiya, K., Zayasu, Y., Nakajima, Y., Arakaki, N., Suzuki, G., Satoh, N., Shinzato, C.
    Genomic analysis of a reef-building coral, Acropora digitifera, reveals complex population structure and a migration network in the Nansei Islands, Japan
    Molecular Ecology, 31, 5270– 5284. (2022) 
  4. Kitchen, S.,A., Jiang, D., Harii, S., Satoh, N., Weis, V.M., and Shinzato, C.
    Coral larvae suppress the heat stress response during the onset of symbiosis thereby decreasing their odds of survival
    Molecular Ecology, in press (2022) 

Functional Genomics

  1. Takeuchi, T., Suzuki, Y., Watabe, S., Nagai, K., Tetsuji Masaoka, T., Fujie, M., Kawamitsu, M., Satoh, N., Myers, E.W.
    A high-quality, haplotype-phased genome reconstruction reveals unexpected 3 haplotype diversity in a pearl oyster
    DNA Research, in press (2022)
  2. Isomoto, A., Shoguchi, E., Hisata, K., Inoue, J., Inaba, K., Satoh, N., Ogawa, T., Hiroki Shibata, H.
    Active Expression of Genes for Protein Modification Enzymes in Habu Venom Glands
    toxins, 14, 300. (2022)  
  3. Nishitsuji, K., Nishitsuji, Y., Yonashiro, Y., Satoh, N.
    Development of DNA markers that distinguish male and female haploid germlings of the brown alga, Cladosiphon okamuranus
    Phycological Research, 70: 160-166.
  4. Shimizu, K., Takeuchi, T., Negishi, L., Kurumizaka, H., Kuriyama, I., Endo, K., Suzuki, M.
    Evolution of Epidermal Growth Factor (EGF)-like and Zona Pellucida Domains Containing Shell Matrix Proteins in Mollusks.
    Mol Biol Evol. 39(7):msac148. doi: 10.1093/molbev/msac148. (2022)
  5. Adi, T.K., Fujie, M., Satoh, N., Ueki, T.
    The acidic amino acid-rich C-terminal domain of VanabinX enhances reductase activity, attaining 1.3- to 1.7-fold vanadium reduction
    Biochemistry and Biophysics Reports, 32, 101349 (2022)  
  6. Boutet, I., Alves Monteiro, H. J., Baudry, L., Takeuchi, T., Bonnivard, E., Billoud, B., Farhat, S., Gonzales-Araya, R., Salaun, B., Andersen, A. C., Toullec, J.-Y., Lallier, F. H., Flot, J.-F., Guiglielmoni, N., Guo, X., Li, C., Allam, B., Pales-Espinosa, E., Hemmer-Hansen, J., Moreau, P., Marbouty, M., Koszul, R., Tanguy, A.
    Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture
    Evolutionary Applications, 00, 1– 19.

Sequencing Collaboration

  1. Yamamoto, K., Yoneda, Y., Makino, A., Tanaka, Y., Meng, X.Y, Hashimoto, Y., Shin-ya, K., Satoh, N., Fujie, M., Toyama, T., Mori, K., Ike, M., Morikawa, M., Kamagata, Y., and Tamaki H.
    Draft genome sequence of Bryobacteraceae strain F-183
    Microbiology Resource Announcements, 11(1):e0045321. doi: 10.1128/mra.00453-21. (2022) 
  2. Yamamoto, K., Yoneda, Y., Makino, A., Tanaka, Y., Meng, X.Y, Hashimoto, Y., Shin-ya, K., Satoh, N., Fujie, M., Toyama, T., Mori, K., Ike, M., Morikawa, M., Kamagata, Y., and Tamaki H.
    Complete Genome Sequence of Luteitalea sp. Strain TBR-22.
    Microbiol Resour Announc. 11(2):e0045521. doi: 10.1128/mra.00455-21. (2022) 
  3. Choirunnisa, A. R., Arima, K., Abe, Y., Kagaya, N., Kudo, K., Suenaga, H., Hashimoto, J., Fujie, M., Satoh, N., Shin-ya, K., Matsuda, K., Wakimoto, T.
    New azodyrecins identified by a genome mining-directed reactivity-based screening
    Beilstein J. Org. Chem. 18, 1017–1025. https://doi.org/10.3762/bjoc.18.102