Publications

2022

Molecular responses of brains to cross-generational warming in a coral reef fish.
MA Bernal, E Schmidt, J Donelson, P Munday, T Ravasi. Frontiers in Marine Science, in Press

Rapid evolution fuels transcriptional plasticity to ocean acidification
J Kang, I Nagelkerke, JL Rummer, R Rodolfo-Metalpa, PL Munday, C Schunter, T Ravasi. Global Change Biology, in Press

A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris
Taewoo Ryu, Marcela Herrera, Billy Moore, Michael Izumiyama, Erina Kawai, Vincent Laudet, Timothy Ravasi, bioRxive, 2022.1.17 https://doi.org/10.1101/2022.01.16.476524

2021

Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish
Carbonne, C., Teixidó, N., Moore, B., Mirasole, A., Guttierez, T., Gattuso, J.P. and Comeau, S., Evolutionary Applications, 2021.12.17 https://doi.org/10.1111/eva.13337

Molecular basis of parental contributions to the behavioural tolerance of elevated pCO2 in a coral reef fish
Alison A. Monroe, Celia Schunter, Megan J. Welch, Philip L. Munday and Timothy Ravasi, Proceedings of the Royal Society B, 2021.12.8 https://doi.org/10.1098/rspb.2021.1931

Two temperate corals are tolerant to low pH regardless of previous exposure to natural CO2 vents
Moisés A. Bernal, Timothy Ravasi, Giverny G. Rodgers, Philip L. Munday, Jennifer M. Donelson, Limnology and Oceanography, 66(11), pp.4046-4061, 2021.10.1 https://doi.org/10.1002/lno.11942

The time course of molecular acclimation to seawater in a euryhaline fish
Celia Schunter, Michael D. Jarrold, Philip L. Munday, Timothy Ravasi, Molecular Ecology, 2021.8.17 https://doi.org/10.1038/s41598-021-97295-3

Diel pCO2 fluctuations alter the molecular response of coral reef fishes to ocean acidification conditions
Lucrezia C. Bonzi, Alison A. Monroe, Robert Lehmann, Michael L. Berumen, Timothy Ravasi & Celia Schunter, Scientific Reports 2021.9.13 https://doi.org/10.1111/mec.16124

Digital Droplet PCR-Based Environmental DNA Tool for Monitoring Cryptocaryon irritans in a Marine Fish Farm from Hong Kong
Hin Hung Tsang,Jose A. Domingos, Jacob A. F. Westaway, Maximilian H. Y. Kam, Roger Huerlimann and Giana Bastos Gomes, Diversity, 2021, 13(8), 350; https://doi.org/10.3390/d13080350

Using bacterial whole genome sequencing to identify toxin genes associated with disease outbreaks in black tiger shrimp (Penaeus monodon) aquaculture production
Kelly Condona,Roger Huerlimann, Tony Charles, Ryan Lowrey, Phoebe Arbon, Dean R.Jerry, Aquaculture, 2021, 7.29; https://doi.org/10.1016/j.aquaculture.2021.737255

The role of ligand-gated chloride channels in behavioural alterations at elevated CO2 in a cephalopod
Jodi T. Thomas, Blake L. Spady, Philip L. Munday, Sue-Ann Watson, Journal of Experimental Biology, 2021.7.8; https://doi.org/10.1242/jeb.242335

Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida)
Gustavo Sanchez, Fernando Á. Fernández-Álvarez, Morag Taite, Chikatoshi Sugimoto, Jeffrey Jolly, Oleg Simakov, Ferdinand Marlétaz, Louise Allcock & Daniel S. Rokhsar, Communications Biology, 2021, 6.29; https://doi.org/10.1038/s42003-021-02348-y

Neuro-molecular characterization of fish cleaning interactions
S. Ramírez-Calero, J. R. Paula,  E. Otjacques,  R. Rosa,  T. Ravasi, C. Schunter, bioRxive, 2021.6.27, https://doi.org/10.1101/2021.06.22.449532

Desert fish populations tolerate extreme salinity change to overcome hydrological constraints
Celia Schunter, Lucrezia C. Bonzi, Jessica Norstog, Jade Sourisse, Michael L. Berumen, Yoseline Angel, Stephen D. Parkes, Matthew F. McCabe, Timothy Ravasi, bioRxive, 2021.5.16, https://doi.org/10.1101/2021.05.14.444120

Rapid multi-generational acclimation of coralline algal reproductive structures to ocean acidification.
Moore, B., Comeau, S., Bekaert, M., Cossais, A., Purdy, A., Larcombe, E., Puerzer, F., McCulloch, M.T. and Cornwall, C.E, Proceedings of the Royal Society B, 288(1950), p.20210130, https://doi.org/10.3390/d13080350

First detection of critically endangered scalloped hammerhead sharks (Sphyrna lewini) in Guam, Micronesia, in five decades using environmental DNA
Alyssa M.Budd, Madalyn K.Cooper, Agnès LePort, Tom Schils, Matthew S. Mills, Mari E. Deinhart, Roger Huerlimann, Jan M.Strugnell, Ecological Indicators, 27 April 2021 | https://doi.org/10.1016/j.ecolind.2021.107649

Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes
Madalyn K. Cooper, Roger Huerlimann, Richard C. Edmunds, Alyssa M. Budd, Agnès Le Port, Peter M. Kyne, Dean R. Jerry, Colin A. Simpfendorfer, Aquatic Conservation, 24 April 2021 | https://doi.org/10.1002/aqc.3591

Unexpected high abundance of aragonite-forming Nanipora (Octocorallia: Helioporacea) at an acidified volcanic reef in southern Japan
James Davis Reimer, Haruko Kurihara, Timothy Ravasi, Yoichi Ide, Michael Izumiyama & Hajime Kayanne, Marine Biodiversity, 2 February 2021 | https://doi.org/10.1007/s12526-021-01165-0

Sex and time specific parental effects of warming on reproduction and offspring quality in a coral reef fish
Rachel K. Spinks, Lucrezia C. Bonzi, Timothy Ravasi, Philip L. Munday, Jennifer M. Donelson, Evolutionary Applications, 18 December 2020 | https://doi.org/10.1111/eva.13187

2020

Proteomic responses to ocean acidification in the brain of juvenile coral reef fish
Hin Hung Tsang, Megan J. Welch, Philip L. Munday, Timothy Ravasi and Celia Schunter, Frontiers in Marine Science, 30 July 2020 | https://doi.org/10.3389/fmars.2020.00605

Methods matter in repeating ocean acidification studies
Philip L. Munday, Danielle L. Dixson, Megan J. Welch, Douglas P. Chivers, Paolo Domenici, Martin Grosell, Rachael M. Heuer, Geoffrey P. Jones, Mark I. McCormick, Mark Meekan, Göran E. Nilsson, Timothy Ravasi & Sue-Ann Watson, Nature 586, E20–E24 (2020). https://doi.org/10.1038/s41586-020-2803-x

First transcriptome assembly of a newly discovered vent mussel, Gigantidas vrijenhoeki, at Onnuri Vent Field on the northern Central Indian Ridge
aewoo Ryu, Jong Guk Kim, Jimin Lee, Ok Hwan Yu, Seungshic Yum, Dongsung Kim, Seonock Woo, Marine Genomics, 12 September 2020, 100819 (2020). https://doi.org/10.1016/j.margen.2020.100819

Viral ecogenomics across the Porifera
Cecília Pascelli, Patrick W. Laffy, Emmanuelle Botté, Marija Kupresanin, Thomas Rattei, Miguel Lurgi, Timothy Ravasi & Nicole S. Webster, Microbiome Volume 8, Article number: 144 (2020). https://doi.org/10.1186/s40168-020-00919-5

Symbiodiniaceae diversity of Palythoa tuberculosa in the central and southern Red Sea influenced by environmental factors
Hin Boo Wee, Michael L. Berumen, Timothy Ravasi and James Davis Reimer, Coral Reefs, 03 August 2020| https://doi.org/10.1007/s00338-020-01989-5

Probing SWATH‐MS as a tool for proteome level quantification in a nonmodel fish
Alison A. Monroe, Huoming Zhang, Celia Schunter, and Timothy Ravasi, Molecular Ecology Resources, 20 July 2020| https://doi.org/10.1111/1755-0998.13229

An Epigenetic Signature for Within-Generational Plasticity of a Reef Fish to Ocean Warming
Taewoo Ryu, Heather D. Veilleux, Philip L. Munday, Imgook Jung, Jennifer M. Donelson and Timothy Ravasi, Frontiers in Marine Science, 30 April 2020 | https://doi.org/10.3389/fmars.2020.00284

Species-specific molecular responses of wild coral reef fishes during a marine heatwave
Moisés A. Bernal, Celia Schunter, Robert Lehmann, Damien J. Lightfoot, Bridie J. M. Allan, Heather D. Veilleux, Jodie L. Rummer, Philip L. Munday, Timothy Ravasi, Science Advances, 18 Mar 2020: Vol. 6, no. 12, eaay3423 DOI: 10.1126/sciadv.aay3423

Neural effects of elevated CO2 in fish may be amplified by a vicious cycle
Celia Schunter, Timothy Ravasi, Philip L Munday, Göran E Nilsson, Conservation Physiology, Volume 7, Issue 1, 2020, coz100, https://doi.org/10.1093/conphys/coz100

2019

Nuclear AGO1 Regulates Gene Expression by Affecting Chromatin Architecture in Human Cells
Muhammad Shuaib, Krishna Mohan Parsi, Manjula Thimma, Sabir Abdu Adroub, Hideya Kawaji, Loqmane Seridi, Yanal Ghosheh, Alexandre Fort, Bodor Fallatah, Timothy Ravasi, Piero Carninci, Valerio Orlando (2019), Cell Systems, Volume 9, Issue 5, 27 November 2019, Pages 446-458.e6 | https://doi.org/10.1016/j.cels.2019.09.005

Testing the Adaptive Potential of Yellowtail Kingfish to Ocean Warming and Acidification,
Philip L. Munday, Celia Schunter, Bridie J. M. Allan, Simon Nicol, Darren M. Parsons, Stephen M. J. Pether, Stephen Pope, Timothy Ravasi, Alvin N. Setiawan, Neville Smith and Jose A. Domingos (2019),  Frontiers in Ecology and Evolution, 09 July 2019 | https://doi.org/10.3389/fevo.2019.00253


The full list of publications can be found here

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