Publications by SQC users
SQC Publication Archives
(last update 2021.04)
SQC members in Author
Yutaka Satou, Atsuko Sato, Hitoyoshi Yasuo, Yukie Mihirogi, John Bishop, Manabu Fujie, Mayumi Kawamitsu, Kanako Hisata, and Noriyuki Satoh
Chromosomal inversion polymorphisms in two sympatric ascidian lineages
Genome Biology and Evolution, evab068,
Published:02 April 2021
Noriyuki Satoh, Koji Kinjo, Kohei Shintaku, Daisuke Kezuka, Hiroo Ishimori, Atsushi Yokokura, Kazutaka Hagiwara, Kanako Hisata, Mayumi Kawamitsu, Koji Koizumi, Chuya Shinzato, Yuna Zayasu
Color morphs of the coral, Acropora tenuis, show different responses to environmental stress and different expression profiles of fluorescent-protein genes
G3 Genes|Genomes|Genetics, jkab018
Published:23 January 2021
Ran Zhao, Takeshi Takeuchi, Ryo Koyanagi, Alejandro Villar-Briones, Lixy Yamada, Hitoshi Sawada, Akito Ishikawa, Shunsuke Iwanaga, Kiyohito Nagai, Yuqi Che, Noriyuki Satoh & Kazuyoshi Endo
Phylogenetic comparisons reveal mosaic histories of larval and adult shell matrix protein deployment in pteriomorph bivalves
Published: 17 December 2020
Anna Prokhorova, Mami Kainuma, Rie Hiyane, Susan Boerner, Igor Goryanin
Concurrent treatment of raw and aerated swine wastewater using an electrotrophic denitrification system
Published: 2 December 2020
Nogawa, Toshihiko; Terai, Atsutaka; Amagai, Keita; Hashimoto, Junko; Futamura, Yushi; Okano, Akiko; Fujie, Manabu; Satoh, Noriyuki; Ikeda, Haruo; Shin-ya, Kazuo; Osada, Hiroyuki; Takahashi, Shunji
Heterologous expression of the biosynthetic gene cluster for verticilactam and identification of new analogues
Journal of Natural Products
Published: 20 November 2020
Yuki Yoshioka, Hiroshi Yamashita, Go Suzuki, Yuna Zayasu, Ipputa Tada, Miyuki Kanda, Noriyuki Satoh, Eiichi Shoguchi, Chuya Shinzato
Whole-genome transcriptome analyses of native symbionts reveal host coral genomic novelties for establishing coral-algae symbioses
Genome Biology and Evolution, evaa240
Published: 13 November 2020
Chuya Shinzato, Konstantin Khalturin, Jun Inoue, Yuna Zayasu, Miyuki Kanda, Mayumi Kawamitsu, Yuki Yoshioka, Hiroshi Yamashita, Go Suzuki, Noriyuki Satoh
Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes
Molecular Biology and Evolution
Published: 02 September 2020
Koki Nishitsuji; Asuka Arimoto; Yoshitaka Yonashiro; Kanako Hisata; Manabu Fujie; Mayumi Kawamitsu; Eiichi Shoguchi; Noriyuki Satoh
Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
Published: 26 June 2020
Akito Ishikawa, Keisuke Shimizu, Yukinobu Isowa, Takeshi Takeuchi, Ran Zhao, Keiji Kito, Manabu Fujie, Noriyuki Satoh, and Kazuyoshi Endo
Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology
Published: 17 June 2020
Fabienne Ziadi-Künzli, Taha Soliman, Hideyuki Imai, Momoko Sakurai, Ken Maeda, Katsunori Tachihara
Re-evaluation of deep-sea dogfishes (genus Squalus) in Japan using phylogenetic inference
Deep-Sea Research Part I: Oceanographic Research Papers.
Published: June 2020
Kazuo Shin-ya, Takuya Hashimoto, Ikuko Kozone, Junko Hashimoto, Hikaru Suenaga, Manabu Fujie, Noriyuki Sato, and Haruo Ikeda
Identification, cloning and heterologous expression of biosynthetic gene cluster for desertomycin
The Journal of Antibiotics
Published: 26 May 2020
Takashi Miyake, Natsuki Aihara, Ken Maeda, Chuya Shinzato, Ryo Koyanagi, Hirozumi Kobayashi, Kazunori Yamahira
Bloodmeal host identification with inferences to feeding habits of a fish-fed mosquito, Aedes baisasi
Scientific Reports 9: 4002 (2019)
Published: 8 March 2019
Kazuo Shin-ya, Takuya Hashitomo, Ikuko Kozone, Junko Hashimoto, Reiko Ueoka, Noritaka Kagaya, Manabu Fujie, Noriyuki Sato, Haruo Ikeda
Novel macrolactam compound produced by heterologous expression of a large cryptic biosynthetic gene cluster of Streptomyces rochei IFO12908
Journal of Antibiotics
Published: 18 Dec 2019
Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh
Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Published: 13 December 2019
Nozomi Hanahara, Takuo Higashiji, Chuya Shinzato, Ryo Koyanagi, Ken Maeda
First record of Larsonella pumilus (Teleostei: Gobiidae) from Japan, with phylogenetic placement of the genus Larsonella
Published: 11 Nov 2019
Yutaka Satou, Ryohei Nakmura, Yu Deli, Reiko Yoshida, Mayuko Hamada, Manabu Fujie, Kanako Hisata, Hiroyuki Takeda, and Noriyuki Satoh
A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona
Genome Biol. Evol. In Press.
Published: 22 October 2019
Ogawa T, Oda-Ueda N, Hisata K, Nakamura H, Chijiwa T, Hattori S, Isomoto A, Yugeta H, Yamasaki S, Fukumaki Y, Ohno M, Satoh N, Shibata H
Alternative mRNA Splicing in Three Venom Families Underlying a Possible Production of Divergent Venom Proteins of the Habu Snake, Protobothrops flavoviridis.
Toxins (Basel). 2019 Oct 9;11(10). pii: E581
Published online: 9 Oct 2019
Lu TM, Kanda M, Furuya H, Satoh N.
Dicyemid Mesozoans: a unique parasitic lifestyle and a reduced genome.
Genome biology and evolution. 2019 Aug;11(8):2232-43.
Published: 26 July 2019
Hosam E.Elsaieda, Taha Soliman, Hany T .Abu-Taleb, Hiroki Goto, and Holger Jenke-Kodam.
Phylogenetic characterization of eukaryotic and prokaryotic gut flora of Nile tilapia, Oreochromis niloticus, along niches of Lake Nasser, Egypt, based on rRNA gene high-throughput sequences
Ecological Genetics and Genomics. Volume 11
Published: May 2019
Konstantin Khalturin, Chuya Shinzato, Maria Khalturina, Mayuko Hamada, Manabu Fujie, Ryo Koyanagi, Miyuki Kanda, Hiroki Goto, Friederike Anton-Erxleben, Masaya Toyokawa, Sho Toshino, and Noriyuki Satoh
Medusozoan genomes inform the evolution of the jellyfish body plan
Nature Ecology & Evolution volume 3, pages 811–822 (2019)
Published: 15 April 2019
Arimoto A, Nishitsuji K, Higa Y, Arakaki N, Hisata K, Shinzato C, Satoh N, Shoguchi E.
A siphonous macroalgal genome suggests convergent functions of homeobox genes in algae and land plants.
DNA Research. 2019 Apr 1;26(2):183-92
Published: 28 March 2019
Nishitsuji, K., Arimoto, A., Higa, Y., Mekaru, M., Kawamitsu, M., Satoh, N., and Shoguchi, E.
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway
Scientific Reports, 9: 4607, 2019
Published: 14 March 2019
Iwasaka H, Koyanagi R, Satoh R, Nagano A, Watanabe K, Hisata K, Satoh N, Aki T.
A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105.
Genes 2018, 9(4), 200
Published: 9 April 2018
Shinzato C, Zayasu Y, Kanda M, Kawamitsu M, Satoh N, Yamashita H and Suzuki G
Using seawater to document coral-zoothanthella diversity: A new approach to coral reef monitoring using environmental DNA.
Front. Mar. Sci.
Published: 20 February 2018
Nakano H, Miyazawa H, Maeno A, Shiroishi T, Kakui K, Koyanagi R, Kanda M, Satoh N, Omori A, Kohtsuka H.
A new species of Xenoturbella from the western Pacific Ocean and the evolution of Xenoturbella.
BMC Evol Biol. 2017 Dec 18;17(1):245.
Published: 18 December 2017
Luo YJ, Kanda M, Koyanagi R, Hisata K, Akiyama T, Sakamoto H, Sakamoto T, Satoh N.
Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian heads.
Nat Ecol Evol. 2017
Published: 04 December 2017
Maeda K, Saeki T, Shinzato C, Koyanagi R, and Satoh N.
Review of Schismatogobius (Gobiidae) from Japan, with the description of a new species.
Ichtyol. Res. (2017)
Published: 25 July 2017
Hasan Z, Koizumi S, Sasaki D, Yamada H, Arakaki N, Fujihara Y, Okitsu S, Shirahata H, and Ishikawa H.
JunB is essential for IL-23-dependent pathogenicity of Th17 cells.
Nature Communications, 8: 15628 (2017)
Published: 30 May 2017
Lu TM, Kanda M, Satoh N, and Furuya H.
The phylogenetic position of dicyemid mesozoans offers insights into spiralian evolution.
Zoological Letters 3: 6 (2017)
Published: 29 May 2017
Hall MR, Kocot KM, Baughman KW, Fernandez-Valverde SL, Gauthier MEA, Hatleberg WL, Krishnan A, McDougall C, Motti CA, Shoguchi E, Wang T, Xiang X, Zhao M, Bose U, Shinzato C, Hisata K, Fujie M, Kanda M, Cummins SF, Satoh N, Degnan SM, and Degnan BM.
The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest.
Published: 13 April 2017
Campbell MA, Nielsen JG, Sado T, Shinzato C, Kanda M, Satoh TP, and Miya M.
Evolutionary affinities of the unfathomable Parabrotulidae: Molecular data indicate placement of Parabrotula within the family Bythitidae, Ophidiiformes.
Molecular Phylogenetics and Evolution, 109, 337-342 (2017)
Published online: 6 February 2017
SQC in Acknowledgement
Kaz Kawamura · Koki Nishitsuji · Eiichi Shoguchi · Shigeki Fujiwara · Noriyuki Satoh
Establishing Sustainable Cell Lines of a Coral, Acropora tenuis
Published: 26 April 2021
Agneesh Baruaa, Alexander S. Mikheyev
An ancient, conserved gene regulatory network led to the rise of oral venom systems
Proceedings of the national Academy of Sciences of the United States of America
Published: March 29, 2021
Jun Inoue,Kanako Hisata,Nina Yasuda,Noriyuki Satoh
An Investigation into the Genetic History of Japanese Populations of Three Starﬁsh,Acanthaster planci,Linckia laevigata,and Asterias amurensis,Based on Complete Mitochondrial DNA Sequences
Published: July 1, 2020
Takahashi A, Suzuki T, Soeda S, Takaoka S, Kobori S, Yamaguchi T, Mohamed HM, Yanagiya A, Abe T, Shigeta M, Furuta Y.
The CCR4–NOT complex maintains liver homeostasis through mRNA deadenylation.
Life science alliance;3(5)
Published: 1 April 2020
Ilsley GR, Suyama R, Noda T, Satoh N, Luscombe NM.
Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq.
Published: 18 Mar 2020
Espinas NA, Furci L, Shimajiri Y, Harukawa Y, Miura S, Takuno S, Saze H.
Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome.
Published: 18 March 2020
Shoguchi E, Yoshioka Y, Shinzato C, Arimoto A, Bhattacharya D, Satoh N.
Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera.
Genome biology and evolution;12(3):203-9.
Published: 27 February 2020
Mostafa D, Takahashi A, Yanagiya A, Yamaguchi T, Abe T, Kureha T, Kuba K, Kanegae Y, Furuta Y, Yamamoto T, Suzuki T.
Essential functions of the CNOT7/8 catalytic subunits of the CCR4-NOT complex in mRNA regulation and cell viability.
Published: 10 Jan 2020
Sanchez G, Jolly J, Reid A, Sugimoto C, Azama C, Marlétaz F, Simakov O, Rokhsar DS.
New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis.
Communications biology; 2(1):1-5
Published: 11 December 2019
Darwell CT, Fischer G, Sarnat EM, Friedman NR, Liu C, Baiao G, Mikheyev AS, Economo EP.
Genomic and phenomic analysis of island ant community assembly.
Published: 10 Dec 2019
Lu TM, Furuya H, Satoh N.
Gene expression profiles of dicyemid life-cycle stages may explain how dispersing larvae locate new hosts.
Zoological Letters; 1;5(1):32
Published: Dec 2019
Arimoto A, Nishitsuji K, Narisoko H, Shoguchi E, Satoh N.
Differential gene expression in fronds and stolons of the siphonous macroalga, Caulerpa lentillifera.
Development, growth & differentiation
Published: 11 November 2019
Takahashi A, Takaoka S, Kobori S, Yamaguchi T, Ferwati S, Kuba K, Yamamoto T, Suzuki T.
The CCR4–NOT deadenylase complex maintains adipocyte identity.
International journal of molecular sciences. 20(21):5274
Published: 24 Oct 2019
Techer MA, Rane RV, Grau ML, Roberts JM, Sullivan ST, Liachko I, Childers AK, Evans JD, Mikheyev AS.
Divergent selection following speciation in two ectoparasitic honey bee mites.
Published: 1 Oct 2019
Techer MA, Rane RV, Grau ML, Roberts JMK, Sullivan ST, Liachko I, Childers AK, Evans JD, Mikheyev AS
Divergent evolutionary trajectories following speciation in two ectoparasitic honey bee mites.
Communications Biology; 2:357
Published: 1 Oct 2019
Nomura Y, Yokobayashi Y.
Systematic minimization of RNA ligase ribozyme through large-scale design-synthesis-sequence cycles.
Nucleic acids research; 47(17):8950-60
Published: 26 Sep 2019
Kawamura K, Maruyama IN.
Forward genetic screen for Caenorhabditis elegans mutants with a shortened locomotor healthspan.
G3: Genes, Genomes, Genetics;9(8):2415-23
Published: 8 Aug 2019
Techer MA, Rane RV, Grau ML, Roberts JM, Sullivan ST, Liachko I, Childers AK, Evans JD, Mikheyev AS.
Genomic analyses of sibling honey bee ectoparasitic mite species show divergent strategies of adaptation.
Published: 2 July 2019
Marion Mennesson, Ken Maeda, Philippe Keith
Evolutionary aspects of cephalic sensory papillae of the Indo-Pacific species of Eleotris (Teleostei: Eleotridae).
Zoologica Scripta 48: 627–639 (2019)
Published: 2 July 2019
Dehm D, Krumbholz J, Baunach M, Wiebach V, Hinrichs K, Guljamow A, Tabuchi T, Jenke-Kodama H, Sussmuth RD, Dittmann E.
Unlocking the spatial control of secondary metabolism uncovers hidden natural product diversity in Nostoc punctiforme.
ACS chemical biology ;14(6):1271-9
Published: 24 May 2019
Genomic insights on secondary metabolism in symbiotic dinoflagellates.
Thesis or Dissertation
Published: 2019 Apr
Brisbin MM, Conover AE, Mitarai S.
Hydrothermal activity and water mass composition shape microbial eukaryote diversity and biogeography in the Okinawa Trough.
Published: 1 Jan 2019
Forward genetic screen for Caenorhabditis elegans mutants with a progressive decline in adult locomotor function.
Thesis or Dissertation
Published: Jan 2019
Poetsch AR, Boulton SJ, Luscombe NM
Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis.
Published: 07 December 2018
Brisbin MM, Mesrop LY, Grossmann MM, Mitarai S.
Intra-host symbiont diversity and extended symbiont maintenance in photosymbiotic Acantharea (clade F).
Published: 27 August 2018
Inoue T, Barker CS, Matsunami H, Aizawa SI, Samatey FA.
The FlaG regulator is involved in length control of the polar flagella of Campylobacter jejuni.
Published: 01 May 2018
Sajiki K, Tahara Y, Villar-Briones A, Pluskal T, Teruya T, Mori A, Hatanaka M, Ebe M, Nakamura T, Aoki K, Nakaseko Y, Yanagida M.
Genetic defects in SAPK signalling, chromatin regulation, vesicle transport and CoA-related lipid metabolism are rescued by rapamycin in fission yeast.
Open Biol. 2018 Mar;8(3). pii: 170261.
Published:28 March 2018
Kobori S, Yokobayashi Y.
Analyzing and Tuning Ribozyme Activity by Deep Sequencing to Modulate Gene Expression Level in Mammalian Cells.
ACS Synthetic Biolology.
Published: 17 Jan 2018
Soliman T, Yang SY, Yamazaki T, Jenke-Kodama H.
Profiling soil microbial communities with next-generation sequencing: the influence of DNA kit selection and technician technical expertise.
PeerJ. 2017 Dec 19;5:e4178.
Published: 19 Dec 2017
Soliman T, Reimer JD, Yang SY, Villar-Briones A, Roy MC, Jenke-Kodama H.
Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan.
Published: 11 Dec 2017
Nomura Y, Chien HC, Yokobayashi Y.
Direct screening for ribozyme activity in mammalian cells.
Chem Commun (Camb).
Published: 7 Nov 2017
Dhamodharan V, Kobori S, Yokobayashi Y.
Large Scale Mutational and Kinetic Analysis of a Self-Hydrolyzing Deoxyribozyme.
ACS Chem Biol.
Published: 23 Oct 2017
Mikheyev AS, Zwick A, Magrath MJL, Grau ML, Qiu L, Su YN, Yeates D.
Museum Genomics Confirms that the Lord Howe Island Stick Insect Survived Extinction.
Curr Biol. 2017 Oct 4. pii: S0960-9822(17)31098-9.
Published: 23 October 2017
Khilyas IV, Sorokin AA, Kiseleva L, Simpson DJW, Fedorovich V, Sharipova MR, Kainuma M, Cohen MF, Goryanin I.
Comparative Metagenomic Analysis of Electrogenic Microbial Communities in Differentially Inoculated Swine Wastewater-Fed Microbial Fuel Cells.
Published: 12 Oct 2017
Aird SD, Arora J, Barua A, Qiu L, Terada K, Mikheyev AS.
Population Genomic Analysis of a Pitviper Reveals Microevolutionary Forces Underlying Venom Chemistry.
Genome Biol Evol. 2017 Oct 1;9(10):2640-2649.
Published: 27 September 2017
Kobori S, Takahashi K, and Yokobayashi Y.
Deep Sequencing Analysis of Aptazyme Variants Based on a Pistol Ribozyme.
ACS Synthetic Biology (2017)
Published: 11 April 2017
SQC in Materials and Methods
Mars Brisbin M, Mitarai S.
Differential Gene Expression Supports a Resource‐Intensive, Defensive Role for Colony Production in the Bloom‐Forming Haptophyte, Phaeocystis globosa.
Journal of Eukaryotic Microbiology;66(5):788-801.
Published: 12 March 2019
Marlétaz F, Peijnenburg KT, Goto T, Satoh N, Rokhsar DS.
A new spiralian phylogeny places the enigmatic arrow worms among gnathiferans.
Current Biology ;29(2):312-8.
Published: 21 Jan 2019
Past Publications by SQC users
Please click the link below to see the past publications by SQC users by year.