Hemichordate Genomes

This is a page that contains links to the basic data on Saccoglossus kowalevskii and Ptychodera flava genomes [link].

  1. Genome assembly and gene prediction
  2. Repeat annotation
  3. Annotation
  4. Transcriptome mapping
  5. Deuterostome novelties
  6. Contact

1. Genome assembly and gene prediction

  • Genome FASTA: Saccoglossus [link]; Ptychodera [link]
  • GFF3 gene model locations: Saccoglossus [link]; Ptychodera [link]
  • Protein sequences: Saccoglossus [link]; Ptychodera [link]
  • CDS sequences: Saccoglossus [link]; Ptychodera [link]

2. Repeat annotation

  • Repeat libraries: Saccoglossus [link]; Ptychodera [link]
  • RepeatMasker .out files: Saccoglossus [link]; Ptychodera [link]

3. Annotation

  • PFAM: Saccoglossus [link]; Ptychodera [link]
  • GO: Saccoglossus [link]; Ptychodera [link]
  • Panther: Saccoglossus [link]; Ptychodera [link]

4. Transcriptome mapping

  • Saccoglossus [link]

5. Deuterostome novelties

The excel file with all deuterostome novelties can be downloaded [here]. It has links to the actual peptide sequence within it.

6. Contact

  • Questions: oleg.simakov [at] oist.jp