About the PI

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Saacnicteh Toledo Patino
Group Leader

BSc University of Tübingen
MSc University of Tübingen
PhD Max Planck Institute for Biology
saacnicteh.toledopatino@oist.jp
Google scholar | ORCID | LinkedIn
 

 

 

I am a structural Biochemist interested in understanding how proteins emerged and evolved to become sophisticated nanomachines

My scientific journey started in Germany, at the Max Planck Institute for Biology, where I obtained my Ph.D. in protein engineering. During my doctoral studies, I investigated how nature uses a mix-and-match mechanism similar to Lego bricks to create new proteins from existing building blocks. I found that small changes such as insertions and deletions  (InDels) can dramatically modify their architecture and function. I moved to Japan in late 2019 to conduct my postdoctoral studies at OIST. Here, I dedicated part of my research to understanding the most catalytically diverse enzyme, the Rossmann fold. By studying this multitasking nanomachine, I gathered meaningful information on how nature recycles existing building blocks of proteins to build new ones that catalyze fundamentally distinct chemistries, such as methylation and redox, also through simple additions or extractions of only a few amino acids. These discoveries led me to question whether InDels could also be involved in switching the topologies (shapes) of proteins, leading to the birth of new catalysis.

My current focus is leveraging my expertise in rational protein engineering and coenzyme evolution to design proteins with electron transfer capabilities, aimed at enhancing sustainable catalysis and energy solutions.

Professional Experience

  • OIST | Buribushi Fellow (since September 2024)
  • OIST | Interdisciplinary Postdoctoral Fellow (October 2023- August 2024)
  • OIST | Postdoctoral scholar (December 2019 - September 2023)

Teaching

  • Protein engineering and evolution (2022, OIST)
  • Enymology and Biochemistry (2017, Bayreuth University)

Honors and awards

2024 The Global Bioconvergence Center of Innovation COI-NEXT Early Career Grant | Japan
  Interdisciplinary Postdoctoral Scholar Fellowship | Japan
  Protein Society Diversity and Inclusion | Travel Award | USA
  Runner-up for the Best AI Solution for Protein Engineering (AI4PD Hackathon) | Chile
  SHINKA Research Grant | Japan
2022 IWATANI Science and Technology Research Grant | Japan
  Rita Colwell Impact Fund Award for the Advance of Women in Science | USA
  Protein Society Annual Symposium | Travel Award | Japan
2021 Best Speed Presentation Award | Research Appreciation Month, OIST | Japan
  Best Scientific Image | Science Art Contest | Japan
2026 Best Poster Presentation | 67th Mosbacher Colloquium | Germany
2015 Best Oral Presentation | Frontiers in Protein Folding, Evolution, and Function | Mexico
2013 International Ph.D. Fellowship in Biological Sciences of the Max Planck Society | Germany

 

Full publication list (here):

Selected Publications

2024

Toledo-Patiño S, Goetz SK, Shanmugaratnam S, Höcker B, Farías-Rico JA. "Molecular handcraft of a well-folded protein chimera". FEBS Letters. 2024 Mar 20. https://doi.org/10.1002/1873-3468.14856. E-publication ahead of print. PMID: 38508768.

2022 Toledo-Patino S, Pascarelli S, Uechi G-I, Laurino P. "Insertions and deletions mediated functional divergence of Rossmann fold enzymes". Proc Natl Acad Sci USA. 2022;119(48). https://doi.org/10.1073/pnas.2207965119
 

Jayaraman V*, Toledo-Patino S*, Noda L, Laurino P. "Mechanism of protein evolution". Protein Science. https://doi.org/10.1002/pro.4362

2021 Chouhan PSB, Gade M, Martinez D, Toledo-Patino S, Laurino P. "Implications of divergence of methionine adenosyltransferase in archaea". FEBS Open Bio. https://doi.org/10.1002/2211-5463.13312
2020

Ferruz N, Lobos F, Lemm D, Toledo-Patino S, Farias-Rico J, Schmidt S, Höcker B. "Identification and analysis of natural building blocks for evolution-guided fragment-based protein design". JMB. https://doi.org/10.1016/j.jmb.2020.04.013

2019

Toledo-Patino S, Chaubey M, Coles M, Höcker B. "Reconstructing the remote origins of a fold singleton from a flavodoxin-like ancestor". Biochemistry. https://doi.org/10.1021/acs.biochem.9b00900

2017 Toledo-Patino S, Lobos F, Höcker B. "Building blocks of Nature: New proteins from conserved fragments". BioSpektrum. 2017;23(6). https://doi.org/10.1007/s12268-017-0847-8
   

 

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